Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35940 43 / 0.0002 unknown protein AT1G20100 41 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013567 [exp] 470 / 1e-168 AT2G17787 45 / 3e-05 unknown protein Lus10033130 [exp] 152 / 1e-43 AT1G75860 51 / 5e-07 unknown protein Lus10034539 [exp] 134 / 3e-36 AT1G75860 56 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019200 [exp] 62 / 6e-11 AT1G20100 71 / 6e-14 unknown protein Potri.005G242400 [exp] 54 / 5e-08 AT1G20100 51 / 3e-07 unknown protein Potri.005G242300 [exp] 44 / 7e-05 AT2G17787 / unknown protein Potri.009G134800 [exp] 41 / 0.0007 AT4G35940 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017274 pacid=23165850 polypeptide=Lus10017274 locus=Lus10017274.g ID=Lus10017274.BGIv1.0 annot-version=v1.0 ATGGCTCGCTGCTTTCCTTATCTGCCTCGAGAAGGCATCCTGGGGAATGTAGCGTGTGGTCGAGCTTCGATTGGACCGATTAAGCCCAACGGTCAAACCG AGAAGATTGAATCAGGAAGTGGCAAAACGAACACAGAGAAGTTGCTGAAGAGGAAATGTAGTAGAAATAAGGAGGAGGATACCAAATCCAAAAGGTCCAA GTTAACCAAGAGTAGTGGTGATTCCCGAAAGGTAAAAGTAGAGGAAGATGAAAGCAGTGGGGTAAGTGAAGAACACGGTCTCCCTTCCTGCATTCGAAGC CCTTGCCCCTCTTTCGAGTCCGTCCAGGCAAGCAAAACAACTTCGAGGACTGATTGTAAAAGTGACAATCCCCAAGAAAGCAAGCGAAAAACTATTCGAA TCCGATTGAATGTGACGAAGTCTGAAGGACCCATATGTGGCGAAAAGCCCAGCCTTGCATCAGCGAGTTCTTCCCAGCAGAATGACACCTGTGAGGATAA CAGACCAAGACATCCTGGTGCTTCCCAGGCGAATAATGCTGGTGAGGATAGACAAAGGCATCCTGTTGCTGCTGCACCGGAAGCTTCAACATCATTGCCA GATTTGAAGAAGAAAGAAAAAGACATATCTACCAAGGTTGGAAAAACTCGCAATAAAGGTTCCCGGCGGGAGAATAAGAAGATGTACATCTACGAGGCAC TTACCAACGGCTGGGCAGCCCCTGCACTTCCTACAGAGCAATCAGAATTTGAAGACCTTGATTGGCTCTGCACATCAACGAAATCTGGAAGACCGAATAG CAGTGGAGCACATTCGGACAATGCTTCTGCCGCGGCTTCTACTTGTAGTGCAAGTTTATGTACGATGTGGCCTAAAGCTCAGTGTTTGCCAGACGTTGAC GTCTATGCTTTGCCCTATACAATTCCATTTTGA
AA sequence Show only first row Show all	>Lus10017274 pacid=23165850 polypeptide=Lus10017274 locus=Lus10017274.g ID=Lus10017274.BGIv1.0 annot-version=v1.0 MARCFPYLPREGILGNVACGRASIGPIKPNGQTEKIESGSGKTNTEKLLKRKCSRNKEEDTKSKRSKLTKSSGDSRKVKVEEDESSGVSEEHGLPSCIRS PCPSFESVQASKTTSRTDCKSDNPQESKRKTIRIRLNVTKSEGPICGEKPSLASASSSQQNDTCEDNRPRHPGASQANNAGEDRQRHPVAAAPEASTSLP DLKKKEKDISTKVGKTRNKGSRRENKKMYIYEALTNGWAAPALPTEQSEFEDLDWLCTSTKSGRPNSSGAHSDNASAAASTCSASLCTMWPKAQCLPDVD VYALPYTIPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17787			unknown protein		Lus10017274 [exp]	0	1
AT2G17787			unknown protein		Lus10013567 [exp]	1.4	0.9316
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	1.7	0.9256
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	2.4	0.9311
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	5.7	0.9079
AT5G17070			unknown protein		Lus10008757 [exp]	6.5	0.8716
					Lus10042562 [exp]	6.6	0.8954
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10040237 [exp]	7.4	0.8645
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	7.5	0.8922
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	7.7	0.9234
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	7.9	0.8886

Compare expression of checked genes

Lus10017274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.