Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42150 454 / 8e-162 Glutathione S-transferase family protein (.1) AT5G16710 42 / 0.0003 DHAR3 dehydroascorbate reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013568 [exp] 654 / 0 AT5G42150 459 / 8e-164 Glutathione S-transferase family protein (.1) Lus10042104 [exp] 41 / 0.0002 AT5G63030 177 / 1e-58 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10001237 [exp] 41 / 0.0002 AT5G63030 171 / 2e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242500 [exp] 480 / 3e-172 AT5G42150 458 / 1e-163 Glutathione S-transferase family protein (.1) Potri.012G046600 [exp] 410 / 2e-144 AT5G42150 407 / 2e-143 Glutathione S-transferase family protein (.1) Potri.015G038300 [exp] 406 / 9e-143 AT5G42150 387 / 1e-135 Glutathione S-transferase family protein (.1) Potri.001G347700 [exp] 43 / 3e-05 AT5G40370 158 / 1e-51 glutaredoxin C2, Glutaredoxin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10017275 pacid=23165783 polypeptide=Lus10017275 locus=Lus10017275.g ID=Lus10017275.BGIv1.0 annot-version=v1.0 ATGAGGAGAGCTCACGGACTAAATACCTATGGCCGAGCCATTGCCGCTGGATCTGGCTTCCAAGCTGCTGTGGCACCAACGCCGAACCCTCTTTTTCGAT CCGCAATGTTGAGCACTTCTTCTGTTTCAGGTCCGCAGTGGCCCTCGCGGAGATTAGCTGATTATTTCGGCCTGAAGGGGACTTCCGTCGCTGCTGGAGT AGTCGGGACGATGTTCTTCTCCGTCGCGGCTTCGTCTATGGCGCAGGAGGTTCACGCCAAGGAGTTGCCAAAATTCATTCCCAAGGATGTTGTCCTGTAT CAGTATGAAGCCTGCCCTTTCTGTAACAAGGTTAAAGCATTCTTGGATTACTACAGCATTCCATACACAGTGGTAGAAGTTAACCCGATTAGTAAGAAGG AGATTAAGTGGTCTGAGTACAAGAAGGTGCCGATTCTCACTGTTGATGGAGAACACATGGTTGAATCCTCAGAGATAGTTAGCGAATTGTTCAAAAAGAT ACATCCAGAGGGCTCCAATGTAGAAGCTGAGGAAGAAACAAAGTGGCGAAAGTGGGTGGACGGTCACTTGGTTCATGTTCTGTCACCAAATATTTACAGA AGTACATCTGAGGCTCTCGAGTCATTTGACTATATTACTAGCAATGGGAATTTCAGCTTCACAGAGAGGTTAGTAGCGAAATATGCTGGAGCAACAGCAA TGTATTTTGTGGCAAAGAAACTTAAGAAGAAGTATAACATCACTGATGAACGTGCAGCCTTGTATGAGTCTGCTGAAACATGGGTGGATGCGCTTAAGGG CCGTGACTATCTTGGTGGCTCACGTCCTAATCTGGCTGATCTGGCGGTTTTTGGTGTTCTAAGGCCAATCAGATACCTCAAATCCGGGAAAGATATGGTG GAACATACTCGTATTGGAGAATGGTACTCGAGGATGGAGGATGCGGTGGGGGAACCTTCAAGAATTAATGCATGA
AA sequence Show only first row Show all	>Lus10017275 pacid=23165783 polypeptide=Lus10017275 locus=Lus10017275.g ID=Lus10017275.BGIv1.0 annot-version=v1.0 MRRAHGLNTYGRAIAAGSGFQAAVAPTPNPLFRSAMLSTSSVSGPQWPSRRLADYFGLKGTSVAAGVVGTMFFSVAASSMAQEVHAKELPKFIPKDVVLY QYEACPFCNKVKAFLDYYSIPYTVVEVNPISKKEIKWSEYKKVPILTVDGEHMVESSEIVSELFKKIHPEGSNVEAEEETKWRKWVDGHLVHVLSPNIYR STSEALESFDYITSNGNFSFTERLVAKYAGATAMYFVAKKLKKKYNITDERAALYESAETWVDALKGRDYLGGSRPNLADLAVFGVLRPIRYLKSGKDMV EHTRIGEWYSRMEDAVGEPSRINA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42150			Glutathione S-transferase fami...		Lus10017275 [exp]	0	1
AT5G42150			Glutathione S-transferase fami...		Lus10013568 [exp]	1.0	0.9379
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10022135 [exp]	4.2	0.9205
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	6.2	0.8966
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	14.4	0.9087
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10024576 [exp]	16.9	0.9040
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	19.4	0.9095
AT1G09800			Pseudouridine synthase family ...		Lus10037366 [exp]	23.1	0.8864
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	25.4	0.9080
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	33.0	0.9066
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	35.1	0.9006

Compare expression of checked genes

Lus10017275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.