Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20110 583 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14270 69 / 1e-11 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G33240 64 / 3e-10 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT1G61690 62 / 7e-10 phosphoinositide binding (.1) AT3G43230 61 / 2e-09 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G29800 59 / 6e-09 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT3G47660 52 / 1e-06 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G19420 49 / 1e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 49 / 1e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 47 / 4e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013571 [exp] 949 / 0 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007623 [exp] 66 / 2e-11 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10038127 [exp] 67 / 4e-11 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 66 / 7e-11 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10005173 [exp] 66 / 8e-11 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10027659 [exp] 65 / 1e-10 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10018391 [exp] 65 / 1e-10 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10039922 [exp] 60 / 3e-09 AT3G43230 661 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029271 [exp] 59 / 5e-09 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018900 [exp] 689 / 0 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G242700 [exp] 664 / 0 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G072300 [exp] 74 / 3e-13 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G163200 [exp] 71 / 2e-12 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.011G032200 [exp] 65 / 1e-10 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.004G062500 [exp] 64 / 1e-10 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.018G064200 [exp] 64 / 2e-10 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.006G135800 [exp] 63 / 2e-10 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.011G071900 [exp] 62 / 5e-10 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G106700 [exp] 58 / 9e-09 AT1G29800 703 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0266 [flax] [poplar] PH PF08416 [flax] [poplar] PTB Phosphotyrosine-binding domain
Representative CDS sequence Show only first row Show all	>Lus10017277 pacid=23165764 polypeptide=Lus10017277 locus=Lus10017277.g ID=Lus10017277.BGIv1.0 annot-version=v1.0 ATGCAACAGGGCGATTACTCCTCCTACTACCAGTTCCCCAACTTCCAAAACCCTAACCCCAACCCCAATCCCAATCACAATTCCAATTCCAATCCGATCG ATCACAACCAGAGCTCATCATTCGCATCAGCGCCACCATTCTCATCCAGCTACGCTCCCTCCGATTACTCCGCGCATCCTCAATCTTATTCTCCTTACTC ATCCAATCCCGATCCCGCTCCTTACGCCCCGCCGGTGAATTCCCAGTCCTCTTTCAACCCGCCTCCTCCTCCTCCTTCAACTCAGCCACCGGTGTTTCCT ACGTATGATTCTCATGGATCTGCTGCTACTGCTTACCAACAGCAACCTGCCGCGCAACAGTCTTATTTCCCGCCGTTTGATCATCATCAGACGGCTGCTA GTTACGCCCCAGCCCCGCCCCAGCCACCGACTGCCGCATCGAATTTGATCCCTGGATCCGGTGCTCCGTACTCTTTAGGGTATTCTGGTTCTTTAAATTC AATCGGAGGAGGATTGACTGCCCCATCTGCATTTGATAATCCGTATGAGAATTCTCCGAAATTTGATCAGGGTGTTGGTTATTTCGACGATAAGTATGGG GTTTATAACAGAGGCAGGTCCGAGTTGGCTTCCGATCCTTATGGGAAGCGACCCGAAGGAGGAAGGTTCGAAACGGGGCGTGATGACGGATACGGGGATG GTGTTTATGCCTACCAAGGAGGGAAGGTGGAGCCGTATGGTGCGCGTGGGACCGCACCGAAATCTTCCACCTCGGCGATGTTTGATGATTATGGAAGAGC CATCAACATACCTAGCTCAAAGGACTCTTCATTGGGTTCAGGTGCGGGTTTCAGTTCTCCTAAGATTGTGCGGGCAGTGCCGAAGATGGAAACCCAGGAA GATGTGAAAAGTGGGGTCCAGAAGTTCAGGGTTAAGCTTCTGGCTGAAAGTGGGGGTCAGAGCACCATGGATGTGCTTTGCCAGATTGGATTGGATGGAA TAAAGATGCTGGATCCCAATACCAGCCGGACTCTTAGAATCTATCCCCTTGAGAACATCACTCGATGCGATAAAATGGACTCGTCAACTTTTGCCTTTTG GTCCAAGAGCACAGTTGATGTTGAACCAAGGCGTATCAGATTGCAATCAAATAGTTACACCACTAATACACTACTTGACACGGTGACTGCTGCAACTGTA CAGCTTAAGGAAATGGGGGGAAGAAGCAAGCCTTCTGATCTTTCAAAGGCATCTGAGCAGACTGCAGAGAGGAAGAAAGGTTTTGGTGAGTGGATAAACT TCGTTAAGCCACCAAATGAAGAGAAAGATCATTGGGTCCCTGATGAAGCAGTTACAAAGTGTACATCATGTGGGACTGATTTCAATGCATTTATCCGTAA GCACCACTGCAGAAACTGTGGAGACATATTCTGTGATAAGTGTACACACGGAAGAATTGCTCTTACTGCTGAGGAGAATGCCCAGCCAGTGAGAGTTTGT GACCGATGCCTGGCAGAAGTAACACAGAGGCTGACTAATTCTAAAGAAGCAGCGAGTAAACCTGCAGCGTTACATAGCCATGAGGACCTTGCCAGGAAGC TTCAGGAGGAGATGGAGAAGAATCGCAAGTCATCTTCAGGAGCGAAGTCGGACGGATCCGGGAAGAGAATGAGAGAAGTTGCATGCCCAACATGTACGGT TCATCTACAGGTTCAGGTTCCAAGTTCGGGTTCGGAGACTATCGAGTGTGGCGTGTGTCAGCATCCGTTTCTAGTCAGTGCTCACTGA
AA sequence Show only first row Show all	>Lus10017277 pacid=23165764 polypeptide=Lus10017277 locus=Lus10017277.g ID=Lus10017277.BGIv1.0 annot-version=v1.0 MQQGDYSSYYQFPNFQNPNPNPNPNHNSNSNPIDHNQSSSFASAPPFSSSYAPSDYSAHPQSYSPYSSNPDPAPYAPPVNSQSSFNPPPPPPSTQPPVFP TYDSHGSAATAYQQQPAAQQSYFPPFDHHQTAASYAPAPPQPPTAASNLIPGSGAPYSLGYSGSLNSIGGGLTAPSAFDNPYENSPKFDQGVGYFDDKYG VYNRGRSELASDPYGKRPEGGRFETGRDDGYGDGVYAYQGGKVEPYGARGTAPKSSTSAMFDDYGRAINIPSSKDSSLGSGAGFSSPKIVRAVPKMETQE DVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIKMLDPNTSRTLRIYPLENITRCDKMDSSTFAFWSKSTVDVEPRRIRLQSNSYTTNTLLDTVTAATV QLKEMGGRSKPSDLSKASEQTAERKKGFGEWINFVKPPNEEKDHWVPDEAVTKCTSCGTDFNAFIRKHHCRNCGDIFCDKCTHGRIALTAEENAQPVRVC DRCLAEVTQRLTNSKEAASKPAALHSHEDLARKLQEEMEKNRKSSSGAKSDGSGKRMREVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	0	1
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	1.7	0.8399
AT3G49800			BSD domain-containing protein ...		Lus10019271 [exp]	2.2	0.8534
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	2.4	0.8476
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10042889 [exp]	5.4	0.7748
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	5.9	0.8209
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	8.9	0.8084
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	10.0	0.8369
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	11.2	0.8027
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	11.7	0.7898
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	12.0	0.8090

Compare expression of checked genes

Lus10017277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.