Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 373 / 4e-129 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 317 / 6e-107 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75880 312 / 6e-105 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G58725 306 / 8e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 306 / 8e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 300 / 1e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G43570 299 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 299 / 7e-100 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G20120 299 / 3e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 290 / 9e-97 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013572 [exp] 590 / 0 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 423 / 1e-148 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 421 / 5e-148 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 308 / 3e-103 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003719 [exp] 305 / 5e-102 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 299 / 8e-100 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 288 / 2e-95 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 284 / 7e-94 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 276 / 6e-91 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 380 / 2e-131 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 368 / 5e-127 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 252 / 2e-81 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 248 / 4e-80 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G051900 [exp] 239 / 9e-77 AT5G45950 430 / 3e-151 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 239 / 1e-76 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.005G205100 [exp] 240 / 2e-76 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 237 / 1e-75 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 236 / 1e-75 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.008G076700 [exp] 236 / 2e-75 AT1G06990 321 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10017278 pacid=23165771 polypeptide=Lus10017278 locus=Lus10017278.g ID=Lus10017278.BGIv1.0 annot-version=v1.0 ATGGGTCCTCTTAAGTACCAATATTCGTTTGTAATACTCATGCTACTGTCCTCATTATGCCTGACGACGTCGGTTATGGGACGAAGATCCCCGCCGACCA GGAGTGGAATAAAGGTGCCGTCGTCGACGTCCCCGGGGAATGTGAGCAATCATAATCTCCCAGCTATTCTGATATTCGGGGACTCCATCATGGACACCGG CATGAACAACAACCTCAACACCGTCGTCAAGTGCAACTTTCTCCCTTACGGAGCTGACTTCCAAGGCGGCTTGCCGTCGGGCAGATTTTGTGACGGCAAA GTTCCTTCCGACATAATTGCGGAGGCATTGGGAATAAAAGAGATAGTGCCAGCATACTTGGACCCAACATTGAAGCCCACTGATCTCCCAACTGGAGTCT CCTTTGCTTCCGGCGGCGCTGGATACGACCCTCTCACCTCCAAATTAGCGTCGGTAGTGTCAATGAGCCAGCAGCTAGAATACTTGAAAGAATACACCGC AAAGTTGAAATTAGTGGTTGGGGAAAACAGAGCCAACTCCATCTTATCCAACAGCTTGTTCCTCGTTGTTGCCGGCAGCGACGACATCGCCAACACTTAC TTCCTCCTTGGAGCTCGACATCATTACGATCTCCCTTCTTATACCGATCTTATGTCCAACTCCGCTTCTGATTTCATTCAGGTATGTGCCGAAGATCGGA ACGAAGCGGCTCTTGTATTCAACTCCAAACTAGAACCGAAGCTGAAGACACTCGGTCAAACATTGAGCGGTTCGAAGATCGTGTACATCGACGTGTACAA TCCCCTGCTTCAACTGATCCAAAACCCACAGAAATTCGGGTTCCAGGAGTCGGAGAAAGGGTGCTGCGGGACGGGATTGCTGGAGGTGGCCGTGTTGTGT AATAAGCTAATACCCACGTGCGCAAATGTGTCGTCTCATGTGTTTTGGGACAGTTTCCATCCTACTGAAAGCACTTACAGGCTTCTGGTTGCGCAACTGC TGGATAAGTACATGGGAGATTTGTCCTGA
AA sequence Show only first row Show all	>Lus10017278 pacid=23165771 polypeptide=Lus10017278 locus=Lus10017278.g ID=Lus10017278.BGIv1.0 annot-version=v1.0 MGPLKYQYSFVILMLLSSLCLTTSVMGRRSPPTRSGIKVPSSTSPGNVSNHNLPAILIFGDSIMDTGMNNNLNTVVKCNFLPYGADFQGGLPSGRFCDGK VPSDIIAEALGIKEIVPAYLDPTLKPTDLPTGVSFASGGAGYDPLTSKLASVVSMSQQLEYLKEYTAKLKLVVGENRANSILSNSLFLVVAGSDDIANTY FLLGARHHYDLPSYTDLMSNSASDFIQVCAEDRNEAALVFNSKLEPKLKTLGQTLSGSKIVYIDVYNPLLQLIQNPQKFGFQESEKGCCGTGLLEVAVLC NKLIPTCANVSSHVFWDSFHPTESTYRLLVAQLLDKYMGDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10017278 [exp]	0	1
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	10.4	0.7007
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10021664 [exp]	11.0	0.7238
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10016353 [exp]	17.5	0.7213
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028741 [exp]	19.7	0.6222
AT3G07200			RING/U-box superfamily protein...		Lus10018271 [exp]	23.2	0.6047
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	24.6	0.7074
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	30.4	0.6510
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	33.0	0.6975
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	41.8	0.6778
					Lus10041324 [exp]	48.1	0.5963

Compare expression of checked genes

Lus10017278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.