Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14820 358 / 7e-123 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 350 / 2e-119 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75890 345 / 1e-117 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G75880 344 / 2e-117 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G75900 335 / 9e-114 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 334 / 2e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 334 / 2e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 319 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59030 313 / 6e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 315 / 2e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013573 [exp] 629 / 0 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 545 / 0 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003719 [exp] 544 / 0 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003717 [exp] 389 / 5e-135 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 389 / 6e-135 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 357 / 1e-122 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 315 / 5e-106 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 304 / 2e-101 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 303 / 2e-101 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 392 / 6e-136 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 392 / 2e-135 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 276 / 1e-90 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 275 / 1e-90 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 267 / 1e-86 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 265 / 1e-86 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 261 / 5e-85 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.014G160100 [exp] 261 / 5e-85 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 252 / 2e-81 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.001G191400 [exp] 251 / 3e-81 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10017279 pacid=23165841 polypeptide=Lus10017279 locus=Lus10017279.g ID=Lus10017279.BGIv1.0 annot-version=v1.0 ATGTCCCGTTCATCGATTCCCGTTCTTCTCATCGGGATCCTTCTTTTCGCCGGTGGCGCCAGGGCACAGGTTCAACTCCCGGCCAACGAGAGCTCCGTGC CGGCGGTTTTGATATTCGGAGACTCGATCGTCGACACCGGTAACAACAACGACCTTCCTTCCCCTGCCAAGAGCAACTTCCCGCCCTACGGTAGGGATTT CCAAGGCGGAGTTCCCACCGGAAGATTCTCCAACGGGAAAGTCCCCTCCGATTTCTTAGTGGAGGAACTTGGAATTAAGGAGACTCTGCCAGCGTACAAG GATCCGAAATTAAAGCCAGAGGATCTTCTCACCGGCGTTTGCTTCGCTTCCGGCGGTGTCGGCTACGATGACTTATCATCTCAAACTGCGTCGGTACCAC CACTGAGTGAACAGCTAAAGCAGTTCAGAGAATACGTGAGTAGAGTGAAACCGATGATCGGAGAAGAAGAAACCCGTAAACTACTGAGCAAGAGCTTAGT AATAATAATGCTGAGTAGCAACGACATAGCCAACACTTACTTCAATTCCCGCCTTCGAGAAATCCAATATGACTTCCCTACTTATGCTGACATTTTGGTC AACACCGCCTCTATTTTTGTAACGGATTTGTACTCAATTGGGTGCCGGAGAATAGGAGTGTTCGGAGCGCCGCCGCTCGGGTGTATTCCGTCCAGCAGAA CCATTGCCGGCGGGATTGAAAGAAAGTGCAGCGAAAAGTACAACAAAGCATCACAACTCTTCAACTCTAAACTATCGTCAACGTTGACGACACTAGATAA AAATTTGGGGCTTGATTCAAGGATTGTCTACATGGACATCTACTACCCAATTCTTGACATCATCAACAATCATCGTTCTTACGGATTCGAAATAGCGGAC AAAGGGTGTTGTGGAACTGGGAAAATAGAGGCATCGGTGTCGTGTAATATGTACAGCCCCTTCACATGTACAGACGATACCAAGTATGTTTTTTGGGACG GCTACCATCCAACGGAGAAGGTTTATAAGCTTCTGGTGAAATTGATTCTAATCAAGTACTACAACTTCTTCATGTAG
AA sequence Show only first row Show all	>Lus10017279 pacid=23165841 polypeptide=Lus10017279 locus=Lus10017279.g ID=Lus10017279.BGIv1.0 annot-version=v1.0 MSRSSIPVLLIGILLFAGGARAQVQLPANESSVPAVLIFGDSIVDTGNNNDLPSPAKSNFPPYGRDFQGGVPTGRFSNGKVPSDFLVEELGIKETLPAYK DPKLKPEDLLTGVCFASGGVGYDDLSSQTASVPPLSEQLKQFREYVSRVKPMIGEEETRKLLSKSLVIIMLSSNDIANTYFNSRLREIQYDFPTYADILV NTASIFVTDLYSIGCRRIGVFGAPPLGCIPSSRTIAGGIERKCSEKYNKASQLFNSKLSSTLTTLDKNLGLDSRIVYMDIYYPILDIINNHRSYGFEIAD KGCCGTGKIEASVSCNMYSPFTCTDDTKYVFWDGYHPTEKVYKLLVKLILIKYYNFFM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10017279 [exp]	0	1
					Lus10008326 [exp]	11.2	0.9889
AT3G24130			Pectin lyase-like superfamily ...		Lus10016678 [exp]	16.1	0.9884
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	20.2	0.9866
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Lus10011884 [exp]	20.8	0.9246
AT4G34760			SAUR-like auxin-responsive pro...		Lus10028466 [exp]	23.7	0.9850
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	24.7	0.9783
					Lus10042799 [exp]	24.7	0.9824
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	26.7	0.9850
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10013573 [exp]	26.8	0.9848
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	31.9	0.9841

Compare expression of checked genes

Lus10017279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.