Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11320 372 / 1e-125 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013574 [exp] 823 / 0 AT1G11320 377 / 3e-128 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242900 [exp] 439 / 8e-152 AT1G11320 389 / 4e-133 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017280 pacid=23165851 polypeptide=Lus10017280 locus=Lus10017280.g ID=Lus10017280.BGIv1.0 annot-version=v1.0 ATGGGAAAGAGGAGAGCGAGTCCAATCGGTCATCTGCATTTCCGCCGCGACTCATACTCCCCATACGGACTGCCGTGGCCTTGTTCCCTTCCTTCTCCGA TTCTTCCCGGTTCATCTAGGGTTTGCGAGGGAATGGAACCCGTAGTGGGGAAAATGAAGGACTTGGCTAAGTCAACTCAAGACTTCTTTGACGGCGTCTT CCACAATCGCGCCAACTCTTCTCGCCGCAATCCGATTGAGATCCTCAAGCGGTTGCAGCGAGAGACATTTTCTGATCTGATGAAAGTTAGAGAGAGGCAG GACAAGCTTGAGCGAGTAGTGTCTTACCAAAAAGTTGTTAAGGGAAGTCCGTTTCGAGATGCTGGTACTCGTGTTAGGGGAGAGATTGATGCTCTAGGTG TTGTACTGATGACGGGGGATGTTGATCAGTTGCACAATCACGTTCTTGGCCAAGCAGGACTGAATGGTGGAGTCAGATCGAAGATATCTTTTGAGGCTCC TATACGTGAAAAGGATACTCTTGTAGCAGAGTTTTTGACTGGTCAGAATCCCACCGGACACAATGGTGAAATCTTGGGGAGCACAATTTGTCTGTCGAAA GTATTGTTTGCCTCACATGTTTGTGACTGGTTCTCAGCTACAATCATGCCTGTAGGAGCTCAGTTCAGGCACCTTGGATTCACTACAGATTCTTCAAATC AGATAAAGGGCCTGACAGAGCTTTCAGCAATTGGACCTCCTCTCCTGACTGAAAAAAACGGTTCTGCTATCGGCTTCACAGTGAGAAAGTCCTATCTTAC CGGTTCGGTGGCTCATTCTCTTACTGGACTGAGGAAAACAAGTTTGTATTCTCATGGATCAGATCATTGCTTCAACACGTTTGGCCAAATTGTGTGTGAA TTACCAAAGGGAGTCAAAGTTTCTGTTCTGGGCATGCACAAACAGCCTGAATCGTCTTGTGGCATTCTCCAGCAAGGAGCAGTCGTGTTACCTGTAGGCA TCTTAAAACACCAAGATGCTCCTGAGCAAATTGAACACTCAACCCCTCCTCGCCTGGAAACAGATCTCTTCGGAACTACCCTAACGGGTTCTATAGCTGT GAAGCTGGAGTCACACTTTGACGAGAGCACAAGAATTGAGGGTTGGGTTCAGAGGAATAACTCTACCCCGAACCTTGTCCAATGGGGTGTGAATGCAATG GACGATTCTGAAGAAGAACTCGGATGGGGGATGAGCGTTGGTGGCACGGTGGATAGTCAAGCTAGCTCAAGCCGGTTTCAAGCAGAATCGTACTTGAAGT TCAATCTTGGGAAGAAGTTCTGCATGAAGCCAGGGGTAGCATATGCAGGGGATAATAGTTCCCGAATGTTTGGGCTCATGCTTAGGTCTAACTGGTCGTT CTGA
AA sequence Show only first row Show all	>Lus10017280 pacid=23165851 polypeptide=Lus10017280 locus=Lus10017280.g ID=Lus10017280.BGIv1.0 annot-version=v1.0 MGKRRASPIGHLHFRRDSYSPYGLPWPCSLPSPILPGSSRVCEGMEPVVGKMKDLAKSTQDFFDGVFHNRANSSRRNPIEILKRLQRETFSDLMKVRERQ DKLERVVSYQKVVKGSPFRDAGTRVRGEIDALGVVLMTGDVDQLHNHVLGQAGLNGGVRSKISFEAPIREKDTLVAEFLTGQNPTGHNGEILGSTICLSK VLFASHVCDWFSATIMPVGAQFRHLGFTTDSSNQIKGLTELSAIGPPLLTEKNGSAIGFTVRKSYLTGSVAHSLTGLRKTSLYSHGSDHCFNTFGQIVCE LPKGVKVSVLGMHKQPESSCGILQQGAVVLPVGILKHQDAPEQIEHSTPPRLETDLFGTTLTGSIAVKLESHFDESTRIEGWVQRNNSTPNLVQWGVNAM DDSEEELGWGMSVGGTVDSQASSSRFQAESYLKFNLGKKFCMKPGVAYAGDNSSRMFGLMLRSNWSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11320			unknown protein		Lus10017280 [exp]	0	1
AT1G11320			unknown protein		Lus10013574 [exp]	1.0	0.9688
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10035477 [exp]	3.2	0.9483
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	8.0	0.9580
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10025656 [exp]	8.1	0.9524
AT1G65300	MADS	AGL38, PHE2	PHERES2, AGAMOUS-like 38 (.1)		Lus10022325 [exp]	8.2	0.9431
AT1G03910			unknown protein		Lus10021530 [exp]	8.4	0.9500
AT3G18570			Oleosin family protein (.1)		Lus10041987 [exp]	12.5	0.9017
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	12.6	0.9533
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	13.6	0.9553
					Lus10027730 [exp]	14.7	0.9360

Compare expression of checked genes

Lus10017280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.