Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 63 / 3e-12 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 62 / 5e-12 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT4G35900 61 / 9e-12 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G17770 56 / 3e-10 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2) AT1G45249 50 / 2e-07 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT2G36270 50 / 2e-07 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G19290 47 / 1e-06 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G34000 45 / 4e-06 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT4G01120 45 / 5e-06 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT2G46270 44 / 1e-05 bZIP GBF3 G-box binding factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017283 [exp] 191 / 5e-63 AT4G35900 76 / 1e-16 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008927 [exp] 57 / 7e-11 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 58 / 2e-10 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10009755 [exp] 52 / 2e-08 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10006489 [exp] 52 / 4e-08 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10022720 [exp] 49 / 4e-07 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 49 / 4e-07 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 48 / 5e-07 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014066 [exp] 48 / 6e-07 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018400 [exp] 68 / 1e-14 AT4G35900 133 / 5e-38 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G109500 [exp] 65 / 5e-13 AT4G35900 179 / 5e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G248300 [exp] 57 / 3e-10 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 56 / 9e-10 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 55 / 2e-09 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.005G243400 [exp] 54 / 6e-09 AT4G35900 117 / 4e-31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G164500 [exp] 53 / 1e-08 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G125400 [exp] 50 / 7e-08 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.014G028200 [exp] 48 / 5e-07 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G018500 [exp] 47 / 1e-06 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10017284 pacid=23165801 polypeptide=Lus10017284 locus=Lus10017284.g ID=Lus10017284.BGIv1.0 annot-version=v1.0 ATGGAACAAGTATGGCAAGATATCAGCTTGTGTCCCCTGCAGGACAACTCCAGGACGCCGCAAACCGCCGTCACGCAACGACATCAAACCGGAAACCTCC ACGACTTCTTCACCGCCGCCGACCGGAGCCCCCCTGAGGCGCCGATTCCTCAAAAGGGTATCTCCAGTTTCCCTCCCTTCCCTGTTTTCCCAGCAATTTC TGCTCCACAAGGGATGGGATCGATCCCCGCCGATGGCGACAAGAAATCTTTGTCCGGCGAGCAGTGGCACAAGCGAAGGATTAAGAACAGGGAATCCGCC GACCGATCCAGAGCCAGAAAACAGGAACTTATTCCTCTGTCCTCTGCGTACACTCAGGAACTGGAGCTTAAAGTGGACCGATTGACGAAGGAGAACGCCA GGCTCAGAAGGCTACTTCATCTTGTAGGTTACCCAAATACAAATTTACAATCAATGATTTCATCCTAG
AA sequence Show only first row Show all	>Lus10017284 pacid=23165801 polypeptide=Lus10017284 locus=Lus10017284.g ID=Lus10017284.BGIv1.0 annot-version=v1.0 MEQVWQDISLCPLQDNSRTPQTAVTQRHQTGNLHDFFTAADRSPPEAPIPQKGISSFPPFPVFPAISAPQGMGSIPADGDKKSLSGEQWHKRRIKNRESA DRSRARKQELIPLSSAYTQELELKVDRLTKENARLRRLLHLVGYPNTNLQSMISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017284 [exp]	0	1
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	4.9	0.9431
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	14.3	0.9333
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10021675 [exp]	17.3	0.9217
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017283 [exp]	20.8	0.8970
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	21.6	0.9274
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	23.8	0.9253
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	25.7	0.9257
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	26.9	0.9260
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	29.6	0.9268
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	31.2	0.9252

Compare expression of checked genes

Lus10017284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.