Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39330 397 / 3e-138 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21730 378 / 1e-130 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT2G21890 372 / 3e-128 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT4G37970 361 / 6e-124 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37980 354 / 3e-121 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37990 346 / 3e-118 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT1G72680 302 / 8e-101 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT3G19450 297 / 9e-99 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 279 / 8e-92 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G43940 61 / 5e-10 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005611 [exp] 668 / 0 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10002089 [exp] 378 / 1e-130 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 377 / 3e-130 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 375 / 2e-129 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 360 / 2e-123 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10003854 [exp] 315 / 2e-106 AT4G39330 486 / 2e-174 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10002812 [exp] 308 / 6e-103 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10014104 [exp] 306 / 2e-102 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10019811 [exp] 306 / 3e-102 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018300 [exp] 553 / 0 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 402 / 3e-140 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.001G307200 [exp] 399 / 6e-139 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G065300 [exp] 375 / 1e-129 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.006G199100 [exp] 370 / 1e-127 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G268600 [exp] 360 / 1e-123 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 358 / 2e-122 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G372400 [exp] 327 / 4e-110 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.006G024300 [exp] 310 / 3e-104 AT1G72680 521 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.011G148100 [exp] 306 / 1e-102 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10017285 pacid=23165846 polypeptide=Lus10017285 locus=Lus10017285.g ID=Lus10017285.BGIv1.0 annot-version=v1.0 ATGGCTCAGACGACACCGAATCACACTCAGACAGTTAGCGGGTGGGCAGCTCAGGACACCTCCGGCCACATCTCTCCTTACACTTTCAAACGCCGTGAGA ACGGAGATACGGATGTAACCATAGACATACTCTACTGTGGAGTCTGCCACACGGATCTCCACCAGGCCAAGAACGATTGGGGCATCACCATGTACCCTAT TGTTCCTGGGCATGAGATAACTGGGATAATAAGGAAAGTGGGGAAGAAGGTGGAGGGTTTTAAGGTTGGAGACAGAGCTGGAATTGGGTGCCTAGCTGCT TCCTGTTTGGACTGTGAGTTTTGCCGGAGCTCCCAGGAGAATTACTGCGACAAAATGCAGTTCACTTACAATGGTGTTTTCTGGGACGGCAGCATTACTT ACGGCGGCTACTCCAATGTGATTGTTTCTGATTACAGGTATGTGGTGCACGTGCCAGAGAACCTCCCGATGGACGCAGCGGCGCCGCTGCTCTGTGCCGG GATCACCGTGTTCACGCCGTTGAAAGACCACAACTTGATTGAATCTCCGAGGAAGAAAATCGGGGTAGTTGGGCTGGGCGGTTTGGGGCATGTCGCCGTC AAATTCGGGAAGGCATTCGGTCACCACGTCACCGTCATCAGCACATCTCCTTCCAAAGAGAAGGAGGCCAGGGAACGCTTGGGTGCCGACGACTTCATCG TCAGCACCAACCCCACTCACATGCAGGCCGGAAGGAGGACTCTGGACTTTATACTGAATACGGTGTCGGCTGGGCACTCATTGGGACCCATTTTGGGGTT GCTAAAAGTCAACGGAACGATGGTCATAGTTGGGGCTCCCGGAAGTTTGCTTGAACTCCCGGCGTTCTCTCTCATATTCGGGAAAAGTACAGTGAAAGGT GGGATAATAGGAGGGATGAAGGAGACGCAAGAGATGATGGACTTGTGCGGGAAACATAACATAACCTGTGATATCGAGGTTGTGAAACCGGACAACATTA ACAAAGCATTCCAACGCCTAGCAGCAAATGATGTCAAGTATCGTTTCGTGATTGATATTGCTGGATCACGCTCCTCTCTCTAA
AA sequence Show only first row Show all	>Lus10017285 pacid=23165846 polypeptide=Lus10017285 locus=Lus10017285.g ID=Lus10017285.BGIv1.0 annot-version=v1.0 MAQTTPNHTQTVSGWAAQDTSGHISPYTFKRRENGDTDVTIDILYCGVCHTDLHQAKNDWGITMYPIVPGHEITGIIRKVGKKVEGFKVGDRAGIGCLAA SCLDCEFCRSSQENYCDKMQFTYNGVFWDGSITYGGYSNVIVSDYRYVVHVPENLPMDAAAPLLCAGITVFTPLKDHNLIESPRKKIGVVGLGGLGHVAV KFGKAFGHHVTVISTSPSKEKEARERLGADDFIVSTNPTHMQAGRRTLDFILNTVSAGHSLGPILGLLKVNGTMVIVGAPGSLLELPAFSLIFGKSTVKG GIIGGMKETQEMMDLCGKHNITCDIEVVKPDNINKAFQRLAANDVKYRFVIDIAGSRSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	1.4	0.9740
					Lus10024615 [exp]	2.4	0.9746
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	4.2	0.9708
					Lus10005394 [exp]	5.7	0.9700
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	6.7	0.9688
AT5G06490			RING/U-box superfamily protein...		Lus10008972 [exp]	6.9	0.9572
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	7.0	0.9619
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	8.5	0.9528
AT3G05390			unknown protein		Lus10029907 [exp]	8.8	0.9657
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	10.4	0.9451

Compare expression of checked genes

Lus10017285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.