Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75980 200 / 2e-66 Single hybrid motif superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005613 [exp] 262 / 4e-91 AT1G75980 275 / 9e-95 Single hybrid motif superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018100 [exp] 231 / 6e-79 AT1G75980 275 / 8e-95 Single hybrid motif superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017287 pacid=23165849 polypeptide=Lus10017287 locus=Lus10017287.g ID=Lus10017287.BGIv1.0 annot-version=v1.0 ATGAAGCCAGGGAATGACCAGTACGTTTATAGACATGCCAATGGTCACGTGGCATTAAAGGATGAAGGAGGGATCACCGCCGTTGATTTCAACGTCGGCA AGTCTGATAGGAGCAGCATGAAGGTCTCCGGAAAACGGAAGAAGAATGCTCAACATTTTGAATCAAATACAGCTCTATGTAAAGTGTGCACTAAACAGGA TTCATATATTGTGAGGTGTTGTGTGAAGGGGTCATTGTTGGAAGTGAATGACAGACTCGTCAAAAACCCTTCTTTGCTCACTTCATCGGCGGATAGAGAG GGTTATGTTGCGATTATGATGCCAAAGCCAGCAGATTGGCTAAAGGTCAAGGTTTCATTGTTGAGCCGCGAAGAGTATGCGAAGTTAAGAGGAGGGTGCT GA
AA sequence Show only first row Show all	>Lus10017287 pacid=23165849 polypeptide=Lus10017287 locus=Lus10017287.g ID=Lus10017287.BGIv1.0 annot-version=v1.0 MKPGNDQYVYRHANGHVALKDEGGITAVDFNVGKSDRSSMKVSGKRKKNAQHFESNTALCKVCTKQDSYIVRCCVKGSLLEVNDRLVKNPSLLTSSADRE GYVAIMMPKPADWLKVKVSLLSREEYAKLRGGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75980			Single hybrid motif superfamil...		Lus10017287 [exp]	0	1
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	1.4	0.9764
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	2.0	0.9636
					Lus10017800 [exp]	2.4	0.9156
AT1G16290			unknown protein		Lus10037104 [exp]	3.3	0.8725
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	3.5	0.9447
					Lus10024757 [exp]	4.0	0.9413
					Lus10040041 [exp]	4.5	0.9246
					Lus10014474 [exp]	7.9	0.8917
AT5G61120			unknown protein		Lus10030998 [exp]	8.7	0.8351
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10008078 [exp]	11.2	0.8768

Compare expression of checked genes

Lus10017287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.