Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42180 462 / 4e-165 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G51890 344 / 1e-118 Peroxidase superfamily protein (.1) AT4G33420 285 / 3e-95 Peroxidase superfamily protein (.1) AT1G05260 264 / 5e-87 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT2G18980 259 / 2e-85 Peroxidase superfamily protein (.1) AT4G11290 257 / 3e-84 Peroxidase superfamily protein (.1) AT3G21770 255 / 1e-83 Peroxidase superfamily protein (.1) AT4G30170 254 / 4e-83 Peroxidase family protein (.1) AT3G01190 254 / 5e-83 Peroxidase superfamily protein (.1) AT5G15180 252 / 2e-82 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005614 [exp] 645 / 0 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10034547 [exp] 561 / 0 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10031664 [exp] 336 / 2e-115 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10027405 [exp] 334 / 2e-114 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10029543 [exp] 280 / 4e-93 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10018374 [exp] 273 / 2e-90 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10001442 [exp] 265 / 2e-87 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10007638 [exp] 262 / 4e-86 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10005679 [exp] 261 / 6e-86 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018000 [exp] 474 / 4e-170 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 451 / 8e-161 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 288 / 3e-96 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 288 / 3e-96 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 288 / 3e-96 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 288 / 3e-96 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 287 / 3e-96 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 285 / 3e-95 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 283 / 1e-94 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 282 / 5e-94 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10017288 pacid=23165837 polypeptide=Lus10017288 locus=Lus10017288.g ID=Lus10017288.BGIv1.0 annot-version=v1.0 ATGGCAGCCATGGCACGTCCCATTCTTGTAACCAGCTTCCTAATCACCTTCACAGTACTCTTTTTCTCCTCTGCCCATTCACTCAGCCTCAACTACTACG ACAAAACTTGCCCCAACCTCGACTCAATAGTTACCAATGCTGTCAAGAAAGCCATGTCAAATGACAGAACAGTCCCCGCTGCATTGCTTCGTATGCACTT CCACGATTGTTTCATCAGGGGTTGTGATGGCTCAGTGTTGTTGAAGTCGACGAAAAACAACGTTGCTGAGAAAGATGGGCCGCCCAACATTTCACTGCAC GCGTTTTATGTGATCGACCATGCCAAAGAAGCAGTTGAGAAATCGTGCCCTGGAGTCGTGTCTTGCGCAGATATTCTTGCTCTGGCTGCTAAAGATGCTG TCGCTTTGTCTGGAGGTCCAAACTGGAAAGTACCAAAGGGAAGATTAGACGGACGAATCTCGAAGGCAACAGAAACCAGACAACTACCAGCTCCAGTATT CAACATCTCACAGCTCCAACAAAGCTTTTCCCAAAGAGGTCTTTCATTGGGAGACATAGTAGCTCTTTCAGGAGGACATACGCTGGGATTCGCTCATTGT TCGTCTTTCAAGAACAGGATCCACAAGTTTAGTCCTAACTTGGATGTTGACTCGACTTTGAACCCATCTTTCGCCGCGAACCTGAAGAAAGTCTGCCCTG CGAAGAACACGGCTAAGAATGCAGGTTCCACATTGGATCCGACTACTTTTGGGTTTGACAATGTTTACTACAAGATGTTGCTTAGTGGGAAGAGCATTTT CTCATCCGACCAGGCTCTGCTCACCAACCCCAAGGCTAAGGCTCTAGTCTCCAAATTTGCTGCCTCCGACGCAGCATTTAAACAGGCGTTTGTTCAGTCC ATGATTAAGATGAGTAGCTTAACTGGTGGCCAGGAGATTCGACGTGATTGTAAGTTTGTGAGGTAA
AA sequence Show only first row Show all	>Lus10017288 pacid=23165837 polypeptide=Lus10017288 locus=Lus10017288.g ID=Lus10017288.BGIv1.0 annot-version=v1.0 MAAMARPILVTSFLITFTVLFFSSAHSLSLNYYDKTCPNLDSIVTNAVKKAMSNDRTVPAALLRMHFHDCFIRGCDGSVLLKSTKNNVAEKDGPPNISLH AFYVIDHAKEAVEKSCPGVVSCADILALAAKDAVALSGGPNWKVPKGRLDGRISKATETRQLPAPVFNISQLQQSFSQRGLSLGDIVALSGGHTLGFAHC SSFKNRIHKFSPNLDVDSTLNPSFAANLKKVCPAKNTAKNAGSTLDPTTFGFDNVYYKMLLSGKSIFSSDQALLTNPKAKALVSKFAASDAAFKQAFVQS MIKMSSLTGGQEIRRDCKFVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	0	1
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	1.0	0.9592
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	2.0	0.9355
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	4.0	0.9167
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10032809 [exp]	5.2	0.8856
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	6.2	0.9317
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	7.7	0.9028
AT4G23690			Disease resistance-responsive ...		Lus10017538 [exp]	8.6	0.8541
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	9.6	0.9272
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	10.1	0.8117
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	11.2	0.9246

Compare expression of checked genes

Lus10017288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.