Plant FIBer expression Database

Lus10017289 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12610 130 / 6e-33 RAP74, ATRAP74 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
AT2G27950 44 / 0.0002 Ring/U-Box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008686
[exp]
585 / 0 AT4G12610 313 / 3e-102 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
Lus10026142
[exp]
577 / 0 AT3G11440 370 / 5e-115 myb domain protein 65 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G009100
[exp]
352 / 2e-115 AT4G12610 289 / 8e-93 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
Potri.016G015100
[exp]
343 / 6e-112 AT4G12610 202 / 1e-59 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF05793 TFIIF_alpha Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Representative CDS sequence
>Lus10017289 pacid=23165768 polypeptide=Lus10017289 locus=Lus10017289.g ID=Lus10017289.BGIv1.0 annot-version=v1.0
ATGACGATCGATCTTGTTCTGAATCCGTCTTGCAGCAGGTGCGGATCCACCTCAAATCTGTACGGAAGCAACTGCAAGCACATGACGTTGTGCTTCGACT
GCGGCAAAAAGATGGCGGAGAGAGGCGCCAGATGCCACGACTGCGGCTCCCCCGTCACTCGCTTGATACGAGAATATAACGTTCGGGCTAGGCCTAGCGA
TGACAAAAACTACTTCATTGGTAAATTCATGGGTGGCCTACCAAATTTTTCCAAGAAGAAAAGTCCTGAGAAGAAATGGTCTATCCATAAAGAAGGACTA
CAAGGGCGCATGCTGTCTGAAGCTTCGAGGGAGAGGTACAAGAATAAACCCTGGATGTTGGAAGATGAAACTGGCCAGCATCGTTTTCATGGCCAAATGG
AAAGCTCACAGTCAGTAACCTATTATCACTTAATGTTTCAAGGAAAAGAGTTTGCTGCCATTCCTGCTTGTTCCTGGTACAACTTCAACAAGGCTGCACA
ATATAAGCAGCTGACGCTGGAGGAAGCTGAAGAGAAGATGAAGAACAGGAGAAAGACGGCAGAGGGATATGAGAGATGGATGATGAAGGCAGCAGCTGAC
GGACCTGCTGCATTTGGTGTTAAGGAAAGTCTTGATGACACGGACGTTGGTAAAGGTGGTGGCATGGGATTCAAAAAATCGTCCGGTGACAATGACGAAG
GGAATGTATCTGGCAAGGGAGAGGAAGATGAGGATGAAGAAGCTTCTAGGAAGGGCAGTCTTGGACTAGGCAAAAGTGGCAGAGATGATGATGAAGAAGG
CAAAAGGGGAGGTGACCATCATGATGATGATGATAGTGCGAAGGGTGATGATTGGGAGCATGACGAAATATTTACTGATGATGACGAAGCAGTTGGAGGT
GATCATGAGTTACCAGAAGAGCTGGGCCCTGCTCCTCCAGAAATAAAGCAGGATGATGAAGACGAGGAGGATGAAGAGAATGAGGAAGGAAAGTTGAGTA
CATCTGGGAAAGGGTTGAAGAAGTTACTTGGGAAAGCTGTTGGGCTTAGTGATTCTGATGGTGAAGATGACGATGATGATGTGAAGAATGGCATTTCTGC
TGTACTGGCTCCCAAGACAAAAGAGGTTGTTAAGGAGGAACCAAGTGACAATAATATGCCATCAAAACCAACAGTTGCTGGTTCGACAACTGGAAATGCA
CCAACTTCAAAGGCCACAAAGAGAAAGAGAAAAGCTGACGATTACATAGTCTCCAATACTGCAACTCCCAAGAAGGCGAAGACAGAAGAATCAAATATAA
AGAAGGTGAAGCCAGAAATTGAATCAAAGACTCGTAAGAGTAGTCCATCCACCAAAGGAGCACCTCCACCATCAAAAGCTGATTCAGCGCCAGCTTCTTG
CCCTGTCACTGAAGAAGAGATAAAGGCTGTTCTATCGGGAGCTGCACCTATCACTACACAAGATCTTTCTGACAGGTTCAAACCGCGTCTAAAATGTCGC
GAGGACAAGAATGCCTTGTATGAGATCTTGAGGAGAATTTCCTGGACTCGGAAGAATGCTGGCGGTGGAGCCAGACATGTTGTGCTCAAACAGTGA
AA sequence
>Lus10017289 pacid=23165768 polypeptide=Lus10017289 locus=Lus10017289.g ID=Lus10017289.BGIv1.0 annot-version=v1.0
MTIDLVLNPSCSRCGSTSNLYGSNCKHMTLCFDCGKKMAERGARCHDCGSPVTRLIREYNVRARPSDDKNYFIGKFMGGLPNFSKKKSPEKKWSIHKEGL
QGRMLSEASRERYKNKPWMLEDETGQHRFHGQMESSQSVTYYHLMFQGKEFAAIPACSWYNFNKAAQYKQLTLEEAEEKMKNRRKTAEGYERWMMKAAAD
GPAAFGVKESLDDTDVGKGGGMGFKKSSGDNDEGNVSGKGEEDEDEEASRKGSLGLGKSGRDDDEEGKRGGDHHDDDDSAKGDDWEHDEIFTDDDEAVGG
DHELPEELGPAPPEIKQDDEDEEDEENEEGKLSTSGKGLKKLLGKAVGLSDSDGEDDDDDVKNGISAVLAPKTKEVVKEEPSDNNMPSKPTVAGSTTGNA
PTSKATKRKRKADDYIVSNTATPKKAKTEESNIKKVKPEIESKTRKSSPSTKGAPPPSKADSAPASCPVTEEEIKAVLSGAAPITTQDLSDRFKPRLKCR
EDKNALYEILRRISWTRKNAGGGARHVVLKQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G12610 RAP74, ATRAP74 transcription activators;DNA b... Lus10017289
[exp]
0 1
AT4G18570 Tetratricopeptide repeat (TPR)... Lus10025419
[exp]
3.9 0.7452
AT4G11280 ATACS6, ACS6 1-aminocyclopropane-1-carboxyl... Lus10028760
[exp]
5.2 0.7538
AT3G50150 Plant protein of unknown funct... Lus10039777
[exp]
5.7 0.7701
AT1G73590 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORME... Lus10018006
[exp]
7.6 0.7559
AT4G18160 KCO6, ATTPK3, A... Ca2+ activated outward rectify... Lus10004611
[exp]
8.2 0.6670
AT5G51480 SKS2 SKU5 similar 2 (.1) Lus10027207
[exp]
8.7 0.7536
AT2G28250 NCRK Protein kinase superfamily pro... Lus10016098
[exp]
9.2 0.6980
AT3G23160 Protein of unknown function (D... Lus10021210
[exp]
14.0 0.6775
AT3G23730 XTH16 xyloglucan endotransglucosylas... Lus10034098
[exp]
16.5 0.7142
AT1G08620 PKDM7D Transcription factor jumonji (... Lus10003548
[exp]
16.9 0.6783

Lus10017289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.