Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013548 [exp] 390 / 1e-136 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 210 / 3e-65 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 184 / 2e-55 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 170 / 2e-47 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10023536 [exp] 116 / 1e-32 ND / Lus10000178 [exp] 114 / 2e-30 ND / Lus10013551 [exp] 119 / 7e-30 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007254 [exp] 115 / 1e-28 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008233 [exp] 114 / 1e-28 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017290 pacid=23165778 polypeptide=Lus10017290 locus=Lus10017290.g ID=Lus10017290.BGIv1.0 annot-version=v1.0 ATGCCCGATGGATGGATTGTGCCAGCTAACTGCAGCTTAACAATTGTGAACCAACTCAGTGTCGACTCTTCTGAACCGCCTTCATTAGAAGCTGCTGCTG ATGTACCTACAAAAATTGAGGCAGATCGACCTCCTAAAGATATCAAAGTATCGTCGGCTGTACTCCCTTCACAAGTTGATAATCCCGACTTCTGTCCACC AAGTGTGCAAATATCCTGCCGAAACCTGATATCGGAACTGTCAACAATGATTAGCAGTCGCAGCTCTTCATTATCTGACAATGGTCTAGGTTTGCTGCAA CAGCAAAAGGAGAAACTCCTTGGTTTCTTCGACATGTTACTCGAGGCTCTCTTTGAAACCAAATCACTTGATGCAGCCGAGAACATCGCTCTCGAAATTC TTGATCAGGAAACTGATCATCCTCTTGAGAAGACCATTCTTAAAGACTTGCTCTCGCGCCTGGCCGAGTTTAAGGAGACCGTTCCAAGCTCTCTGTCAAC CATCGAAACCAGCAGCGTTGTCGAATCATCTGTGGGCCGGATGACCAAAGATCTGGAGCAAAGGAGGGTTCACAAGAAGGGGCAGTTGATTTCTCTGGAG GCAGAGGTTTGTAGATTCCGTGAAGAAAGATCGAAGCTGGACGTCGAAATTCAGCAATTAAATGCACGCAAGGCGAAGATTGTAGCTCACACGATTTGTG CTGAGGTTGAGCTGGAGAAGGCCGTCGAAGATGCTAGCAAGCTACTGGATGAAGTTAAGGAGCAACGCGATAAAAGGAAGCGGGCGGGAGAAGAGCGGAT GAGAGCCAAGGATAAGCTGGCTCAATCTAATGCAAGTTGGAAGCTTTTCAAGGAGAACTTAGGATGGTAA
AA sequence Show only first row Show all	>Lus10017290 pacid=23165778 polypeptide=Lus10017290 locus=Lus10017290.g ID=Lus10017290.BGIv1.0 annot-version=v1.0 MPDGWIVPANCSLTIVNQLSVDSSEPPSLEAAADVPTKIEADRPPKDIKVSSAVLPSQVDNPDFCPPSVQISCRNLISELSTMISSRSSSLSDNGLGLLQ QQKEKLLGFFDMLLEALFETKSLDAAENIALEILDQETDHPLEKTILKDLLSRLAEFKETVPSSLSTIETSSVVESSVGRMTKDLEQRRVHKKGQLISLE AEVCRFREERSKLDVEIQQLNARKAKIVAHTICAEVELEKAVEDASKLLDEVKEQRDKRKRAGEERMRAKDKLAQSNASWKLFKENLGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017290 [exp]	0	1
AT4G33985			Protein of unknown function (D...		Lus10027898 [exp]	1.4	0.9439
AT2G15220			Plant basic secretory protein ...		Lus10001358 [exp]	1.7	0.9123
AT2G21100			Disease resistance-responsive ...		Lus10034473 [exp]	2.0	0.9326
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10012766 [exp]	10.8	0.8266
					Lus10006918 [exp]	13.9	0.8998
					Lus10007508 [exp]	15.5	0.8998
AT1G04670			unknown protein		Lus10004041 [exp]	17.0	0.8998
					Lus10027066 [exp]	18.3	0.8998
AT5G16740			Transmembrane amino acid trans...		Lus10035738 [exp]	19.3	0.8920
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	19.6	0.8998

Compare expression of checked genes

Lus10017290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.