Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06600 99 / 4e-22 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 95 / 1e-20 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58250 81 / 1e-16 TRAF-like family protein (.1) AT3G58210 79 / 3e-16 TRAF-like family protein (.1) AT3G58350 77 / 2e-15 RTM3 RESTRICTED TEV MOVEMENT 3 (.1) AT3G58270 77 / 3e-15 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT4G09770 76 / 4e-15 TRAF-like family protein (.1.2) AT3G58200 75 / 8e-15 TRAF-like family protein (.1) AT3G58340 75 / 1e-14 TRAF-like family protein (.1) AT3G44800 76 / 2e-14 Meprin and TRAF (MATH) homology domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013547 [exp] 403 / 2e-141 AT3G44800 72 / 2e-14 Meprin and TRAF (MATH) homology domain-containing protein (.1) Lus10025569 [exp] 335 / 4e-112 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10013548 [exp] 292 / 2e-96 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 301 / 2e-92 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10017290 [exp] 257 / 1e-83 ND / Lus10027030 [exp] 222 / 2e-69 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10007254 [exp] 211 / 4e-61 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008233 [exp] 177 / 5e-51 ND / Lus10008326 [exp] 128 / 2e-34 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012600 [exp] 100 / 1e-22 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 100 / 2e-22 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 100 / 2e-22 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 98 / 9e-22 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G099600 [exp] 72 / 9e-14 AT3G17380 344 / 1e-118 TRAF-like family protein (.1) Potri.003G103200 [exp] 71 / 3e-13 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.014G055400 [exp] 69 / 6e-13 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.001G130700 [exp] 63 / 1e-10 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.017G049100 [exp] 62 / 1e-10 AT3G17380 246 / 3e-80 TRAF-like family protein (.1) Potri.010G075000 [exp] 63 / 2e-10 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10017291 pacid=23165825 polypeptide=Lus10017291 locus=Lus10017291.g ID=Lus10017291.BGIv1.0 annot-version=v1.0 ATGGATGCTAAGCATCAGCTGGTCAGTATCACAGGGACCGTCAAATTCAGATGGAAAATTGAGAATTATTCAACGCTGAAAGAAACCAGACACTATTCCG ACACCTTCGTAGCTGGTGGCCACAAATGGAGGGTTATCGTGTACCCCAAGGGAAAGAAGGCTGCCGATTTTCTATCAGTATTTTTGGATTTCGTTAAAAT GATGCCCAATGGCTCTATGGTTCCAGCTAACATCAACTTAACCATTGTCAACCAACTTTCCGTCGACTCCTCTTTGAAACGGACTTTTACACACAATCAC CAGCAGGGGAAGACTTCCATGGGATTTTCGCGGCTAGTTCCGCTTGGAGACCTGCATCCTAAAGGGTTCATTCTGGATGATACTCTCATTGTTGAAGTCG AAGTTTCCACCGAAGGGAGTTCAACAGATGCTGCTGCTGCTGATGAACCAAAAGTAATCGAGGCCGATCAGCCTCCTGAAGATATCAAACCATCATTGTC TCAACTATCTTCTCAAGCGATTCAGGTTGATAATCCTGGAAATGCAAATACCGGGAGTCACTTCTCTCCGGCTAGTGTTCAATTAGCCTGCAGAAACCTG ATTTCAGAACTGTCAGCAGTGATTAGTAATCCAGGAAGCTGTTTGCTGCAACAGCAAAAGGAGAAACTCGTTGCGCTGTTTGGTGTTTCGCTCGAGACCC TCTGCCAAACCAAATTACTGGACGATGTCGAGAGCCTTGCTCTTGGAATTCTCGATCAGACTACTGAACCTGTCGAGACGAACTTTCTGATAGACTTGCT CTCGCGCCTAGCCGAGTTTAAGGACACGGTTCCTAGCTCGCTGTCAACTATAGAGGCCAGCCGTGCTGTCGAATCATCCATAGCTGAGGTGACCAGAGAT CTGGACCGAAGGTTGATTCGAAAGAAAGAGGAGTTGACTTGTTTGGAGGGAGAGGTGTCTAGGCTTGAGGAAGAACGGCTGAAGCTGGATGCTGAAATTC AGCGATTGTACGCCTGCAGGGCGAAGATTGTGGATCAGGCGAATTGTACGGCGATTGAACTGGAGAAAGGCGTTGAAGAAGCGTCGAAAGTACTGGAGGA GCTGAAGAAGCAACTTGAGGAAAGCCAGCAAGCTGGGAGAAAGCGGATGAGAGCCATGGATGATCTGGCTGAGTCGAATGCGAGTTTCAAGGTTTTCAAG GACAAGTTAGGATGGTGA
AA sequence Show only first row Show all	>Lus10017291 pacid=23165825 polypeptide=Lus10017291 locus=Lus10017291.g ID=Lus10017291.BGIv1.0 annot-version=v1.0 MDAKHQLVSITGTVKFRWKIENYSTLKETRHYSDTFVAGGHKWRVIVYPKGKKAADFLSVFLDFVKMMPNGSMVPANINLTIVNQLSVDSSLKRTFTHNH QQGKTSMGFSRLVPLGDLHPKGFILDDTLIVEVEVSTEGSSTDAAAADEPKVIEADQPPEDIKPSLSQLSSQAIQVDNPGNANTGSHFSPASVQLACRNL ISELSAVISNPGSCLLQQQKEKLVALFGVSLETLCQTKLLDDVESLALGILDQTTEPVETNFLIDLLSRLAEFKDTVPSSLSTIEASRAVESSIAEVTRD LDRRLIRKKEELTCLEGEVSRLEEERLKLDAEIQRLYACRAKIVDQANCTAIELEKGVEEASKVLEELKKQLEESQQAGRKRMRAMDDLAESNASFKVFK DKLGW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10017291 [exp]	0	1
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10019227 [exp]	2.0	0.8546
AT5G04000			unknown protein		Lus10018038 [exp]	2.0	0.8465
AT3G15395			unknown protein		Lus10027849 [exp]	2.2	0.7959
					Lus10027448 [exp]	4.6	0.8435
AT1G71080			RNA polymerase II transcriptio...		Lus10042948 [exp]	6.2	0.7714
					Lus10041320 [exp]	6.9	0.8168
AT3G13845			unknown protein		Lus10015617 [exp]	8.4	0.7863
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Lus10035800 [exp]	11.2	0.7935
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10039574 [exp]	12.4	0.7711
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10021873 [exp]	13.6	0.7239

Compare expression of checked genes

Lus10017291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.