Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64140 86 / 4e-23 RPS28 ribosomal protein S28 (.1) AT5G03850 86 / 4e-23 Nucleic acid-binding, OB-fold-like protein (.1) AT3G10090 86 / 4e-23 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016222 [exp] 105 / 2e-30 AT3G10090 111 / 3e-34 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029320 [exp] 105 / 2e-30 AT3G10090 111 / 3e-34 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013543 [exp] 103 / 5e-28 AT5G64140 114 / 4e-33 ribosomal protein S28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013200 [exp] 97 / 4e-27 AT5G64140 90 / 5e-26 ribosomal protein S28 (.1) Potri.010G245400 [exp] 97 / 4e-27 AT5G64140 90 / 5e-26 ribosomal protein S28 (.1) Potri.016G063100 [exp] 96 / 4e-27 AT5G64140 89 / 1e-25 ribosomal protein S28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01200 [flax] [poplar] Ribosomal_S28e Ribosomal protein S28e
Representative CDS sequence Show only first row Show all	>Lus10017293 pacid=23165793 polypeptide=Lus10017293 locus=Lus10017293.g ID=Lus10017293.BGIv1.0 annot-version=v1.0 ATGCCCCCCACTACAAAAGGCCTAAGGATTCTAGTACAGCAGCCTTCCTTGCAAAATCGCCGAGAGAAAAACCTAGTAGCAGCTGCAGCAGCCCGCCGTT GTCCGCTTCCATCGCTCTCATCTCGTCGGAGCTTCCTCTTGCAATTGAAGACTGGTTGGATGGTGGAGATATTTCTAGGGTGCTTTGTTTGCTATCTCTT TCGAATGGATTCTAATTGCTGTCCTCGTGGATCTGGTGCAATCGAAGAACTGATGGAATCTGGGATCAAGCATGCTTTGGTGGTGAAAGTGATGGGCCGT ACTGGATCGAGGGGTCAGGTGACTCAAGTCAGGGTCAAGTTCATCGATGATCCTAACCGTTTCATCATGAGGAATGTCAAGGGACCAGTGAGAGAAGGTG ACATCCTCACCTTGCTCGAATCCGAGAGAGAGGCCAGGAGACTTCGTTGA
AA sequence Show only first row Show all	>Lus10017293 pacid=23165793 polypeptide=Lus10017293 locus=Lus10017293.g ID=Lus10017293.BGIv1.0 annot-version=v1.0 MPPTTKGLRILVQQPSLQNRREKNLVAAAAARRCPLPSLSSRRSFLLQLKTGWMVEIFLGCFVCYLFRMDSNCCPRGSGAIEELMESGIKHALVVKVMGR TGSRGQVTQVRVKFIDDPNRFIMRNVKGPVREGDILTLLESEREARRLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10017293 [exp]	0	1
AT1G54380			spliceosome protein-related (....		Lus10022813 [exp]	1.7	0.8213
AT1G71730			unknown protein		Lus10029741 [exp]	3.5	0.8050
AT2G24050		eIFiso4G2	eukaryotic translation Initiat...		Lus10035812 [exp]	4.1	0.7131
AT5G24510			60S acidic ribosomal protein f...		Lus10008944 [exp]	4.5	0.8073
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	5.2	0.8061
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	5.5	0.7971
AT5G24510			60S acidic ribosomal protein f...		Lus10002680 [exp]	6.3	0.7994
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	9.9	0.7905
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	13.1	0.7682
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	13.3	0.7629

Compare expression of checked genes

Lus10017293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.