Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11960 1595 / 0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) AT3G55200 120 / 4e-27 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 120 / 4e-27 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT4G21100 104 / 2e-22 DDB1B damaged DNA binding protein 1B (.1) AT4G05420 91 / 3e-18 DDB1A damaged DNA binding protein 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013542 [exp] 2460 / 0 AT3G11960 1640 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10033455 [exp] 97 / 6e-20 AT4G05420 1519 / 0.0 damaged DNA binding protein 1A (.1.2) Lus10020922 [exp] 89 / 3e-17 AT4G21100 1606 / 0.0 damaged DNA binding protein 1B (.1) Lus10023443 [exp] 86 / 2e-16 AT3G55220 2237 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10040321 [exp] 86 / 3e-16 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G197200 [exp] 1888 / 0 AT3G11960 1679 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Potri.001G357900 [exp] 111 / 3e-24 AT4G05420 1995 / 0.0 damaged DNA binding protein 1A (.1.2) Potri.010G212100 [exp] 87 / 1e-16 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.008G048900 [exp] 86 / 2e-16 AT3G55200 2254 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03178 [flax] [poplar] CPSF_A CPSF A subunit region
Representative CDS sequence Show only first row Show all	>Lus10017295 pacid=23165766 polypeptide=Lus10017295 locus=Lus10017295.g ID=Lus10017295.BGIv1.0 annot-version=v1.0 ATGGCGGTTACTGAGGAGGAATGCTCCAACGCCAAATCCCGGTCCTCTTCCTCCTCCTCCGCCGTTGTCGGATCCGCCCGTGACTCCCATTACCTTGCCA AGTGCGTCCTCCCCGGTAGCGCCATCCTCCACGTCGTCTCTGCTCACTTCCGCTCCTCTTCCTCCTTGGACATCGTCTTCGGCAAGGAGACATCCATAGA GCTAGTAGTAGTGGACGAAGATGGGGCTGTACAGTCTGTTTGCGAGCAACCTGTATTTGGCACGATAAAAGATCTTGCCGCTGTACCTTGGAGTAGCAGA TTCCACTCCCGAACAACTATTATGCAGGGAAAAGACCTTCTAGCTGTAATTTCTGACTCCGGGAAGCTCTCATTCCTCACATTCAGCAATGAAATGCACA GTGGCTGTTTTGTTGCTACTAGTGCATATGAAGATCGGTTAGCTCTTTTCTCCCTTTCAACTTGTGGTGGCAATGACATAATTGATAAGAGAATACTTTA TCCTCCTGAAAATGAAGCAAGCACAGTTGTTGGCAGAGGCAACCGGCGAATGAGTTTCTCTGGCACAATATGGAGCATGTGCTTTATCTCAAGACATTCA ATTCAATCAAGCAAGGAGCATAATCCTGTACTAGCGATTATAGTAAATAGGACAGAATGTGTTCTCAATGACTTGCTGTTATTGGGATGGAACGTGAAAG AACACACTATAGGCGTTCTTTCTCAATTTGTTGAAGCTGGACCTTTGGCACATGATATTGTAGAAGTTCCTCATTCTAATGGTTTTGCCTTTCTGTTTAG GGTTGGTGATGCCCTTTTGATGGATCTCAGAGATGCTCATAGCCCTAGTTGTTTATCTAGGATAAGCCTCAATTCCTTGCCTGCTGCAATAGAGGAACAT AATTTTGTTGAAGAGCCATGTAAAGTTCATGAAGTCGACGATGATGGTTTATTTAACGTAGCTGCTTCTGCGTTGCTGGAGCTGCGGGATTATGATCCCA TGTGTATAGACGGTGATAGTAGTGATATAAAATCAACCTCTAAGCATATGTGCTCGTGGAGCTGGGAACCAGTATCTGGTAAAAGTGCAAAGATGGTTTT TTGTGTAGACACAGGAGAATTTTTCATGATTGAAGTAGCAATTGATTCAGAAGCTCCTAAAGTCTATCTTTCTGAATGTCTCTATAGAGGCTTACCATGT AAAGAACTTCTGTGGATTGAAGGTGGGTTTCTAGCTGCTATTGTGGACATGGGTGATGGCATTATCCTCAAAGTGGAAAATGAAAGACTTCTACACATAA GCCCTATCCAAAACATTGCACCAATATTGGATATGTCAATTGTAGATTACCATGATGAGAAACGAGATCAAATGTTTGCCTGCTGTGGTGCAGCTCCTGA GGGATCATTAAGGATTATTCGTAATGGAATAAATGTTGAAAGGTTATTGAAGACTGCTCCTACATATCAAGGAATAATTGGTACCTGGTCAATTCGAATG GGATTAACCGATTTGCATCATTCTTTTCTTGTTCTGTCGTTTGTTGAAGAGACCAGGGTTCTGTCAGTTGGAGTAAGCTTTACCGATGTAACTGATTCAG TTGGTTTCCTGCCAGATGTTTCTACTTTGGCATGTGGACTCGTAACTGATGGTTTGTTGGTTCAGGTTCACCAAGCTGCAGTTCAGTTTTCCTTGCCTAC AAAGATTGCTCGGGCTGAAGGTTCACCATTGTCATCCCCAGTTTGCAAATCTTGGTCTCCAGATAATACAAGTATTAGCTTAGGTGCAGTTGGACAGAAT TGGATTGTTGTTTCCACTTCTAATCCTTGCTTTTTATATGTTCTTGGTGTCAGAATGCTTTCTGGTTATGAGTATGAAATAGTTGAATTGCAACATTTAA GGTTACTAAGTGAGTTATCTTGCATTTCTATACCTCAAAAACAATTTCAACAAGCAAGATCAAATCCAGTCAATTCCGTGCACAATAGCTCTGCAACTCT CTGTCCAGGTGGGGTTGAAGTAGATAAGATATTTGTTGTTGGCACACATAGGCCATCCGTGGAAGTTATATGCTTTAAGCCTGGTGAAGGCTTAAAAGTC ATAGCTTCTGGTACAATTGCATTAACAACTGCTATGGGGACTGCTATTGGTGGGTGTGTTCCTCAAGATGTCAGAGTTGTACTAGTTGATCGATATTATG TTCTTTCTGGTTTGAGGAATGGTATGCTACTGCGGTTTGAGTGGTGTTCTGCAAGTTTGATGCCTTCATTTGTTACATCCAATCTCAACAGTCCTACTGA AATTTCATCTGCGATGAATCTTGAGCCTCTGTCATGTGGTTCAACTGATATGTCAATGGATGAGCTTCCTGCTACATTGGAATTGATTGCCAGCCGCCGG ATAGGCATTACTCCTGTATTCCTGGTTCCTCTCAGTGATTCTCTTGATGCAGATATAATTGCTCTTAGTGATAGGCCGTGGTTGCTGCAAACTGCCAGAC ACAGTCTCTCATATATTTCGATATCATTTCAGTCTGCAACACATGCAACACCAGTATGCTCAGCTGAATGCCCTAAAGGAATTTTGTTCGTTGCGGAGAA CAGTTTGCATTTGGTGGAGATGGTTAGTTCCAAGAGGCTTAATGTGCAGAAGTTCCATCTTGGAGGTACCCCGCGGAAGATTCTATATCACAGTGAAAGC AGATTATTAATTGTGATGAGGACGGATCTGAGTAACGATACATGTTCTTCTGATATATGTTGTGTTGATCCTGTAAATGGTTCTATCGTTTCATATTTTA AACTTGATCTTGGTGAGACTGGCAAATCCATGGAGTTGGTAAGGTTGGGAAGTGACCAGGTTCTTGTGGTTGGAACCAGCCTCTCTTCCGGCCCAGCCAT CATGCCCAGTGGCGAAGCTGAAAGTACCAAGGGCCGTCTACTTGTCCTCTGCCTGGAACACTTGCAAAATTCAGACACTGGTTCTATGATTCTGGGATCA AGGGCAGGATCATCTTCCCAAAGGACGTCCCCGTTTCGTGATATTGCTGGATATGCTATGGAGCAGCTATCAGGCAGTAGTCATGGCAGCAGCCCAGATG ATACCAGCTGTGATGGAGTTAAACTTGAGGAAACTGAAGTTTGGCAGTTCCGATTGGCTTATGCAACAGTATTACACGGCATGGTACTTGCAATATGCCC ATACTTAGATCGATACTTCTTGGCCTCTGCTGGTAGTGGTTTTTATGTATGCGGCTTTGGGAATGAAAACCCGCAAAGAGTGAAAAAGTTGGCTCTTGGA AGGACACGCTTTATGATAACATCGTTGACTGCACACTATACCAGGATCGCAGTTGGTGATTGCCGAGATGGGGTTCTTTTTTATTCTTATCACGAGGACA CAAAAAAGGTGGAGCAACTTTATTGTGACCCTTGTCAAAGATTAGTTGCTGATTGTGTCCTTGTGGATCCCGACACAGCTGTGGTTTCTGACAGGAAGGG GAGCATTGCTATTTTATCATGTTCGGATCGTTTGGAATGTAACGCCAGTCCAGAGAGCAATTTGAAGTTGAGCAGTGTGTATTATACTGGTGAGGTAGCC ATGAGCTTGAAGAAGGGTTCCTTTTCCTATAAACTCCCCGCAGACGATTTGCTGACGGGTTGTGATGACATTCTTGCCAATGTTAGTGCGTCAGGCAACA CTATCATGGCTAGTACGCTATTAGGGGGCATAATGGTCCTTTTCCCATTGTCAAGGGATGACCACGAACTCCTAGAAGCTGTTCAAGCGAGACTTGCCGT CCATCCTTTGACAGCTCCTCCTCTAGGAAATGATCACCATGAGTTTCGAAGCCGAGAGAACCCTGTGAGAGTGCCCAAGATACTGGATGGCGATATGTTG GCTCAGTTCCTGGAACTAACCCATGCACAACAGGATGCGGTATTATCGGTGCCAGTTGTAACGATGTCGAATAAAGTTGGCATCAAAGCTGTAGCGACCT CTCCACTCTCTGTTAGCCAGGTGGTTCAGGTCTTGGAACGGGTTCATTACGCTCTCAGTTAG
AA sequence Show only first row Show all	>Lus10017295 pacid=23165766 polypeptide=Lus10017295 locus=Lus10017295.g ID=Lus10017295.BGIv1.0 annot-version=v1.0 MAVTEEECSNAKSRSSSSSSAVVGSARDSHYLAKCVLPGSAILHVVSAHFRSSSSLDIVFGKETSIELVVVDEDGAVQSVCEQPVFGTIKDLAAVPWSSR FHSRTTIMQGKDLLAVISDSGKLSFLTFSNEMHSGCFVATSAYEDRLALFSLSTCGGNDIIDKRILYPPENEASTVVGRGNRRMSFSGTIWSMCFISRHS IQSSKEHNPVLAIIVNRTECVLNDLLLLGWNVKEHTIGVLSQFVEAGPLAHDIVEVPHSNGFAFLFRVGDALLMDLRDAHSPSCLSRISLNSLPAAIEEH NFVEEPCKVHEVDDDGLFNVAASALLELRDYDPMCIDGDSSDIKSTSKHMCSWSWEPVSGKSAKMVFCVDTGEFFMIEVAIDSEAPKVYLSECLYRGLPC KELLWIEGGFLAAIVDMGDGIILKVENERLLHISPIQNIAPILDMSIVDYHDEKRDQMFACCGAAPEGSLRIIRNGINVERLLKTAPTYQGIIGTWSIRM GLTDLHHSFLVLSFVEETRVLSVGVSFTDVTDSVGFLPDVSTLACGLVTDGLLVQVHQAAVQFSLPTKIARAEGSPLSSPVCKSWSPDNTSISLGAVGQN WIVVSTSNPCFLYVLGVRMLSGYEYEIVELQHLRLLSELSCISIPQKQFQQARSNPVNSVHNSSATLCPGGVEVDKIFVVGTHRPSVEVICFKPGEGLKV IASGTIALTTAMGTAIGGCVPQDVRVVLVDRYYVLSGLRNGMLLRFEWCSASLMPSFVTSNLNSPTEISSAMNLEPLSCGSTDMSMDELPATLELIASRR IGITPVFLVPLSDSLDADIIALSDRPWLLQTARHSLSYISISFQSATHATPVCSAECPKGILFVAENSLHLVEMVSSKRLNVQKFHLGGTPRKILYHSES RLLIVMRTDLSNDTCSSDICCVDPVNGSIVSYFKLDLGETGKSMELVRLGSDQVLVVGTSLSSGPAIMPSGEAESTKGRLLVLCLEHLQNSDTGSMILGS RAGSSSQRTSPFRDIAGYAMEQLSGSSHGSSPDDTSCDGVKLEETEVWQFRLAYATVLHGMVLAICPYLDRYFLASAGSGFYVCGFGNENPQRVKKLALG RTRFMITSLTAHYTRIAVGDCRDGVLFYSYHEDTKKVEQLYCDPCQRLVADCVLVDPDTAVVSDRKGSIAILSCSDRLECNASPESNLKLSSVYYTGEVA MSLKKGSFSYKLPADDLLTGCDDILANVSASGNTIMASTLLGGIMVLFPLSRDDHELLEAVQARLAVHPLTAPPLGNDHHEFRSRENPVRVPKILDGDML AQFLELTHAQQDAVLSVPVVTMSNKVGIKAVATSPLSVSQVVQVLERVHYALS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	0	1
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	1.0	0.9560
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	1.4	0.9555
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	2.8	0.9334
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	3.0	0.9489
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000873 [exp]	3.2	0.9208
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10034008 [exp]	3.3	0.9157
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	5.3	0.9044
AT4G30100			P-loop containing nucleoside t...		Lus10033462 [exp]	5.5	0.9292
AT2G25730			unknown protein		Lus10007687 [exp]	5.5	0.9314
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	6.0	0.9213

Compare expression of checked genes

Lus10017295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.