Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 256 / 3e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35030 163 / 1e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 149 / 4e-41 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16835 140 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62260 139 / 8e-38 MEF9 mitochondrial editing factor 9 (.1) AT1G56690 137 / 6e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 130 / 1e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G13410 126 / 1e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G45350 127 / 2e-33 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46460 124 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013540 [exp] 449 / 6e-155 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 140 / 7e-38 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012514 [exp] 139 / 7e-38 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10030549 [exp] 140 / 8e-38 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 135 / 3e-36 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009290 [exp] 129 / 2e-34 AT2G45350 605 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 130 / 3e-34 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015874 [exp] 125 / 1e-32 AT2G45350 687 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030932 [exp] 125 / 1e-32 AT3G29230 318 / 3e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 308 / 4e-100 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 162 / 1e-45 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 161 / 1e-45 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G139200 [exp] 149 / 2e-41 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.005G006400 [exp] 149 / 2e-41 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G038400 [exp] 149 / 2e-41 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 149 / 4e-41 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G087300 [exp] 144 / 2e-39 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G068800 [exp] 141 / 1e-38 AT2G45350 735 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 130 / 9e-35 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017297 pacid=23165813 polypeptide=Lus10017297 locus=Lus10017297.g ID=Lus10017297.BGIv1.0 annot-version=v1.0 ATGAGGAGATATATTGGCTCTAGTTGCAAGTATGGCCAGAAAATTCAGTTAGAGAAACTTCCAAAAGGAAATACTCAATCCGTGTGTCTCGGCTCTTACC CTTCGAAGAAAGAGCTGCGATCTAAATGCAGAGAAGCCAAACATGGCTTGAAAATTTGTACGAACGACTCCGATATTCTGCAGTGGAACATGGCTATCTC CACCCACATGCGCAATGGAAGATGCAATTCTGCTTTACGAGTATTTAACTCGATGCATCGGCGGAGTTCAGTCTCGTATAACGCGATGATATCTGGTTAT ATTATGAATGACAAGTTTCGGCTTGCTAAAGAAATGTTTGATAAAATGCCTGAAAGGGATTTGTTTTCCTGGAATGTTATGCTGAGTGGATATGTCAGGA ATCGGAGTCTTACTGCTGCCAGGGAATTGTTTGAGAAAATGCCTGTAAAGGATGTTGTTTCTTGGAACACTATGTTGTCTGGATATGCACAGAATGGCTT TGTCGATGAGGCCAGATGTATTTTCGATAAGATGCCTACTGTGAATGCAATCTCCTGGAATGGCTTGCTTTCTGCGTATGTGCAAAACGGGAGATTAGAT GATGCGAGAAAATTGTTCGAGTCAAAGATGGATTGGGAGACTGTTTCTTGGAATTGTTTGATTGGTGGCTTTGTGAAAAAGGAAGAGGTCGGTCGATGCG AGGAAACTTTTTGA
AA sequence Show only first row Show all	>Lus10017297 pacid=23165813 polypeptide=Lus10017297 locus=Lus10017297.g ID=Lus10017297.BGIv1.0 annot-version=v1.0 MRRYIGSSCKYGQKIQLEKLPKGNTQSVCLGSYPSKKELRSKCREAKHGLKICTNDSDILQWNMAISTHMRNGRCNSALRVFNSMHRRSSVSYNAMISGY IMNDKFRLAKEMFDKMPERDLFSWNVMLSGYVRNRSLTAARELFEKMPVKDVVSWNTMLSGYAQNGFVDEARCIFDKMPTVNAISWNGLLSAYVQNGRLD DARKLFESKMDWETVSWNCLIGGFVKKEEVGRCEETF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10017297 [exp]	0	1
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10037989 [exp]	17.2	0.8369
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	18.2	0.8166
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	19.1	0.8236
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	32.4	0.7992
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10030787 [exp]	33.5	0.8143
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	46.3	0.7620
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	46.4	0.8054
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	48.4	0.7879
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	49.8	0.7906
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	51.3	0.7973

Compare expression of checked genes

Lus10017297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.