Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 302 / 3e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 224 / 3e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 213 / 2e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G16835 216 / 1e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 219 / 7e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 211 / 2e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 211 / 3e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 210 / 3e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 211 / 5e-63 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G04780 209 / 5e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013540 [exp] 387 / 3e-130 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 230 / 2e-70 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036921 [exp] 225 / 1e-68 AT4G37170 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 223 / 1e-66 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 210 / 5e-66 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 219 / 2e-65 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000597 [exp] 208 / 1e-64 AT4G16835 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 216 / 3e-64 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 217 / 5e-64 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 323 / 1e-105 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 228 / 6e-70 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 228 / 1e-69 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 227 / 7e-69 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 225 / 2e-67 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 222 / 2e-67 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 224 / 9e-67 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 221 / 9e-67 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 219 / 3e-66 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 218 / 7e-66 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017298 pacid=23165800 polypeptide=Lus10017298 locus=Lus10017298.g ID=Lus10017298.BGIv1.0 annot-version=v1.0 ATGCCTATAAAAGACGAGGTTTCATGGAATACGATGATTACTGGTTATGCACAGAAGGGAGAAGTGGAAGAAGCGCAGAGATTGTTTGATCAGTCTCCAA CTAAGGATGTGTTTACATGGACTTCAATGGTTTCTGGATATGTCCAAAACAGTTGGTGTACTGTCTGCCTTGGTCACGCTGGTTTAGTAGACAAAGGGAC TGAATGTTTCTATTCAATGACCCAAGAGTACGGAATAACACCAAATCCTGTGCACTACACTTGCATGGTTCATCTCTTGGGTCGAGCTGGGCGCCTGAAG GAGGCCCAGGAACTAATAAAGAAGATGCCTTTCAAACCAGATGCTGCAGCTTGGGGAGCTTTACTTGGTGCGAGCAGAGTGCATGGAAATATTGAACTGG GTGAAAGTGTTGCGGATACTATTTTCAGTATGGAGCCTAATAATTCCGGCATGTACATTCTCCTATCAAATTTATACGCAGCTTTAGGTAGATGGCCGGA AGTTGATAGGATGAGACGGAGAATGAGGAATGAAGGCGTCAAGAAAGTGCCCGGCTATAGCTGGCTCGAAGTGCAGAACGAAATTCATACTTTTCGAGTT GGGGACACCTCTCATCCAGACAAGGATAGGATATACTCATTTTTAGCCGAGATGGTGCAGAAGATGAAGCAGGAGGGCTACGTTTCATTGACGAAATTGG TGTTACATGATGTGGAAGAGGAAGAGAAGGAGCATATGCTGGAGTTGCACAGCGAGAAATTGGCCGTAGCGTACGGGATTCTATCTGTCCCTGCTGGTAG ACCGGTCCGCGTGATAAAGAACTAG
AA sequence Show only first row Show all	>Lus10017298 pacid=23165800 polypeptide=Lus10017298 locus=Lus10017298.g ID=Lus10017298.BGIv1.0 annot-version=v1.0 MPIKDEVSWNTMITGYAQKGEVEEAQRLFDQSPTKDVFTWTSMVSGYVQNSWCTVCLGHAGLVDKGTECFYSMTQEYGITPNPVHYTCMVHLLGRAGRLK EAQELIKKMPFKPDAAAWGALLGASRVHGNIELGESVADTIFSMEPNNSGMYILLSNLYAALGRWPEVDRMRRRMRNEGVKKVPGYSWLEVQNEIHTFRV GDTSHPDKDRIYSFLAEMVQKMKQEGYVSLTKLVLHDVEEEEKEHMLELHSEKLAVAYGILSVPAGRPVRVIKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10017298 [exp]	0	1
AT5G05800			unknown protein		Lus10007443 [exp]	4.5	0.6755
AT5G20950			Glycosyl hydrolase family prot...		Lus10013390 [exp]	11.2	0.6252
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10017031 [exp]	18.2	0.6664
AT2G01640			unknown protein		Lus10027869 [exp]	18.7	0.6480
AT4G24320			Ubiquitin carboxyl-terminal hy...		Lus10027445 [exp]	21.0	0.6227
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014244 [exp]	23.5	0.6568
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10005547 [exp]	27.6	0.6520
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	30.9	0.6419
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10021074 [exp]	45.9	0.5841
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	47.3	0.6018

Compare expression of checked genes

Lus10017298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.