Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13570 82 / 2e-19 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 77 / 1e-17 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G55460 59 / 4e-11 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT5G18810 57 / 1e-10 SCL28, At-SCL28 SC35-like splicing factor 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013539 [exp] 120 / 2e-35 AT1G55310 119 / 5e-34 SC35-like splicing factor 33 (.1.2.3) Lus10016215 [exp] 82 / 4e-20 AT1G55310 119 / 6e-34 SC35-like splicing factor 33 (.1.2.3) Lus10000953 [exp] 53 / 1e-08 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10002699 [exp] 52 / 1e-08 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006400 [exp] 83 / 5e-20 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 83 / 7e-20 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.016G062500 [exp] 79 / 1e-18 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 74 / 5e-17 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.008G196700 [exp] 62 / 5e-12 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.010G026100 [exp] 61 / 2e-11 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.010G203200 [exp] 54 / 2e-09 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.008G056600 [exp] 54 / 3e-09 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017299 pacid=23165757 polypeptide=Lus10017299 locus=Lus10017299.g ID=Lus10017299.BGIv1.0 annot-version=v1.0 ATGAGGGGAAGAAGCTACAGTTACAGTCCTTCTCCGCCGAGAGGATATGGAAGGCCACGCCGCCGCAGTCCTAGCCCAAGGGGACGTTATGGAGGTCGTA GCAGGGATATGCCAACCAGTCTCCTAGTTCGCAACCTTCGACATGACTGCAGGCCTGAAGATCTCCGCAGACCATTCGGGCAGTTTGGTCCTTTGAAGGA CATTTATCTGCCACGCGATTATAATACAGGTAGTGAGCCTGAACGAAGGAGGCCACCTTCGCCCCCACGATATAGACGCAGCAGGTATTCCAGGAGTCCC GAGTACTCTCCATCTCCGAGGGGAAGGCGTTACTCAAGGTCCATATCTCGGAGGGATAGAAGCTATGGAGAGCGTTCATACTCAAGGTCAAAGTCACCTT CCATTGACCGAATGAGAAGCCCAAGTGGTAGCAGGACTCGCAGCCTGGACTAA
AA sequence Show only first row Show all	>Lus10017299 pacid=23165757 polypeptide=Lus10017299 locus=Lus10017299.g ID=Lus10017299.BGIv1.0 annot-version=v1.0 MRGRSYSYSPSPPRGYGRPRRRSPSPRGRYGGRSRDMPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPRDYNTGSEPERRRPPSPPRYRRSRYSRSP EYSPSPRGRRYSRSISRRDRSYGERSYSRSKSPSIDRMRSPSGSRTRSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	0	1
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	2.2	0.8379
AT5G63060			Sec14p-like phosphatidylinosit...		Lus10039952 [exp]	5.3	0.8045
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	5.7	0.8081
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037615 [exp]	7.7	0.8220
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10021879 [exp]	11.0	0.7150
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	13.7	0.7858
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	14.5	0.7746
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	16.2	0.7932
AT5G09225			unknown protein		Lus10020870 [exp]	16.3	0.7814
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	16.5	0.7733

Compare expression of checked genes

Lus10017299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.