Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15670 196 / 5e-60 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 187 / 2e-56 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 185 / 6e-56 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 166 / 5e-48 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 87 / 6e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 80 / 2e-16 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT2G24540 79 / 4e-16 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 77 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 74 / 1e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT4G03030 74 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013538 [exp] 493 / 2e-177 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 381 / 1e-132 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 376 / 1e-130 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 96 / 7e-22 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 91 / 3e-20 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 91 / 4e-20 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 89 / 9e-20 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10001071 [exp] 83 / 2e-17 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 82 / 4e-17 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196900 [exp] 375 / 1e-130 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G007000 [exp] 338 / 6e-116 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G218400 [exp] 329 / 2e-112 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 189 / 2e-57 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 191 / 3e-57 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178500 [exp] 180 / 5e-54 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G000700 [exp] 181 / 2e-53 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G211700 [exp] 89 / 7e-20 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G050600 [exp] 86 / 6e-19 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G217700 [exp] 87 / 8e-19 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10017300 pacid=23165867 polypeptide=Lus10017300 locus=Lus10017300.g ID=Lus10017300.BGIv1.0 annot-version=v1.0 ATGGCGGACTTCTCGGAGCTGATTCCTGGCTTGCCGGAGGAGATAGCCATGGAGTGTCTAATCCGACTGCACTTCTCTGCTCACGGAGTCGCTTCCGGTG TCTGCCGCCGGTGGCGTAACTTAGTCACGACCAAGGAATTCTACTACCACAGGAAGCAGACTGGACATACTCGCAAGGCGGCGTGTCTAATTCAAGCGCT CCCGGTGCCGGAACCGGAGTTCACCACGGGGAACAAACCGGTTGGACCGCCGAGGTATGGATTTTCTCTGTTTGACCCTGTCAGTGGGTCGTGGGAGCGG ATCGAGCCGGTGCCCGATTACCCAACCGGGCTGCCACTGTTCTGCCAGGTGACCAGCACGGAAGGGAAGCTGGTGGTGATGGGCGGGTGGGACCCGGCGG ATTTCCACCCGGTGAGTCACGTGTTCGTCTACGAGTTTACGACTCGGAGATGGAGGAAGGGGAAGAACATGCCGGAGGCACGCTCGTTCTTCGGTGCACA CCGCTGTGTCTCCGCTGCCGCGGGTTGGAACGGGAGGGTCTTAGTCGCCGGCGGTCACGACGAGAACAAAAACGCGCTGAAGACCGCGTGGGCGTACGAC GTGGACTCCGACAACTGGATTGGGTTGCCGGCGATGAGCCAGGTGCGAGACGAGTGCGAAGGTGTTGTAATTGGGTCGGAGTTCTGGGTCGTCGGCGGGT ACCGCACAGAGAGCCAAGGTGAATTCGAAGGCAGCGCGGAGGCAATCGAGCTCCCAGCGTTGGAAGAAGAAAGTGGCGGAAGCACGTTGAGATGGAGGCG CGTGGGGGAAGCGTGGAAGGCCGGGCAGTGCCCTAGGTCCTGCCTAGGAGTGACGATCCCGATGGCCGGGAAGAGCGGCGAATTGTTCAACTGGGCGGAG GTGGGAAGCGGAGTGGCGCGGAGATGGGAAGCGGAGCGGCGAAAGTGGGAGCCTGTGGGGTCCAGCTAG
AA sequence Show only first row Show all	>Lus10017300 pacid=23165867 polypeptide=Lus10017300 locus=Lus10017300.g ID=Lus10017300.BGIv1.0 annot-version=v1.0 MADFSELIPGLPEEIAMECLIRLHFSAHGVASGVCRRWRNLVTTKEFYYHRKQTGHTRKAACLIQALPVPEPEFTTGNKPVGPPRYGFSLFDPVSGSWER IEPVPDYPTGLPLFCQVTSTEGKLVVMGGWDPADFHPVSHVFVYEFTTRRWRKGKNMPEARSFFGAHRCVSAAAGWNGRVLVAGGHDENKNALKTAWAYD VDSDNWIGLPAMSQVRDECEGVVIGSEFWVVGGYRTESQGEFEGSAEAIELPALEEESGGSTLRWRRVGEAWKAGQCPRSCLGVTIPMAGKSGELFNWAE VGSGVARRWEAERRKWEPVGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	2.4	0.9170
AT1G15670			Galactose oxidase/kelch repeat...		Lus10013538 [exp]	4.7	0.8710
AT1G68490			unknown protein		Lus10038934 [exp]	9.5	0.8819
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	9.5	0.8840
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	10.4	0.8928
AT4G39040			RNA-binding CRS1 / YhbY (CRM) ...		Lus10028787 [exp]	12.0	0.8579
					Lus10011136 [exp]	12.6	0.8550
AT1G27290			unknown protein		Lus10003121 [exp]	13.7	0.8901
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10013558 [exp]	14.3	0.8145
AT3G02555			unknown protein		Lus10027224 [exp]	15.4	0.8583

Compare expression of checked genes

Lus10017300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.