Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10850 241 / 4e-80 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G62850 226 / 5e-74 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT1G66770 214 / 4e-69 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT3G28007 202 / 1e-64 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT5G40260 187 / 8e-59 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT1G21460 162 / 2e-49 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G50800 153 / 4e-45 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G15920 151 / 5e-45 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT4G25010 146 / 1e-42 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT3G16690 145 / 1e-42 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003200 [exp] 439 / 6e-158 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10032426 [exp] 352 / 2e-123 AT4G10850 254 / 7e-85 Nodulin MtN3 family protein (.1) Lus10023047 [exp] 311 / 2e-107 AT4G10850 218 / 4e-71 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 231 / 4e-76 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 220 / 2e-71 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 219 / 4e-71 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10042131 [exp] 207 / 2e-66 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10022226 [exp] 189 / 7e-60 AT5G62850 223 / 4e-73 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10011990 [exp] 166 / 1e-50 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143100 [exp] 282 / 5e-96 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 222 / 2e-72 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 216 / 2e-70 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 168 / 2e-51 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 157 / 3e-47 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 157 / 4e-47 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 156 / 1e-46 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 155 / 1e-46 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 157 / 2e-46 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 156 / 2e-46 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10017302 pacid=23140166 polypeptide=Lus10017302 locus=Lus10017302.g ID=Lus10017302.BGIv1.0 annot-version=v1.0 ATGTCTCTTGACACTACCAGGACTGCGGTCGGCATCATCGGAAATGTCATCTCCTTATGCTTGTTTCTCTCCCCACTGCCAACTTTCGTGCAAATATGGA AGAAAAGATCCGTGGAGCAGTTCAAACCCGACCCGTATCTCGCCACGCTGCTCAACTGTATGACGTGGGTGGTGTACGGTCTCCCGATCGTCCACCCAAA CAGCACGTTAGTGCTCACGATCAACGGCGCCGGCACCGTCATCCAGTTCGTCTACATAGCGCTCTACCTCGTCTACTCCGACAAGAAAAAGCGCGTCAAG GTTGCTGCCATCGTCCTTGTCGAGATCTCCTTCGTGGTGCTCGTATTCCTCCTTGTTGTCTTCCTCGTACGCCCGATCGAGAAGCGGTCCACCATCGTTG GCGTCCTCTGCGTCCTGTTCTGCCTCATGATCTATGTTGCTCCCCTCTCTGTCATGAAACTGGTGATCAAGACGAGAAGCGTGGAGTACATGCCGTTCAC GCTGTCGCTCGCTTCCTTTGCGAACGGTGCTTGCTGGACAGCCTACGCCTTGATCCGAATCGACTGGTTCATCATGATACCAAATGGGTTAGGAGCGTTG CTGGCGGTGGGGCAGCTGTTTCTATACGCAACCTTCTACAAATCAACAAAGACGCAAATTGCAGAGAGGAGTGCGGCGGAGAAAGGTGGATCAGAGCTCA CTCTGCCGCAGGTTGTCTTGGCTTTGGATGAACAAGTAGTTGCTAAGGCAGTGAATGTCGTCCACCATTGA
AA sequence Show only first row Show all	>Lus10017302 pacid=23140166 polypeptide=Lus10017302 locus=Lus10017302.g ID=Lus10017302.BGIv1.0 annot-version=v1.0 MSLDTTRTAVGIIGNVISLCLFLSPLPTFVQIWKKRSVEQFKPDPYLATLLNCMTWVVYGLPIVHPNSTLVLTINGAGTVIQFVYIALYLVYSDKKKRVK VAAIVLVEISFVVLVFLLVVFLVRPIEKRSTIVGVLCVLFCLMIYVAPLSVMKLVIKTRSVEYMPFTLSLASFANGACWTAYALIRIDWFIMIPNGLGAL LAVGQLFLYATFYKSTKTQIAERSAAEKGGSELTLPQVVLALDEQVVAKAVNVVHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10017302 [exp]	0	1
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10003200 [exp]	1.0	0.8770
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009130 [exp]	2.4	0.7997
					Lus10027052 [exp]	10.6	0.6543
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	14.4	0.6971
					Lus10010518 [exp]	20.0	0.5619
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	21.1	0.6602
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	24.2	0.6548
AT2G07180			Protein kinase superfamily pro...		Lus10008546 [exp]	25.1	0.5531
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027881 [exp]	26.1	0.5701
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10005541 [exp]	31.1	0.5487

Compare expression of checked genes

Lus10017302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.