Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55090 1274 / 0 carbon-nitrogen hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003203 [exp] 1457 / 0 AT1G55090 1303 / 0.0 carbon-nitrogen hydrolase family protein (.1) Lus10000200 [exp] 844 / 0 AT1G55090 732 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087400 [exp] 1318 / 0 AT1G55090 1274 / 0.0 carbon-nitrogen hydrolase family protein (.1) Potri.003G143700 [exp] 1299 / 0 AT1G55090 1291 / 0.0 carbon-nitrogen hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF02540 [flax] [poplar] NAD_synthase NAD synthase CL0039 [flax] [poplar] PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10017307 pacid=23140256 polypeptide=Lus10017307 locus=Lus10017307.g ID=Lus10017307.BGIv1.0 annot-version=v1.0 ATGAGGCTGCTGAAGCTTGCTACCTGCAACTTGAACCAATGGGCGATGGACTTCGACTCCAACTTAAACCACATAAAGGAGTCAATCACCAGAGCTAAAC AAGCCGGCGCCGTCATTCGCCTCGGTCCAGAGCTCGAGATCACCGGCTACGGCTGCGAGGATCACTTTCTCGAGCTCGACACCATCTCTCACTCATGGGA GTGTCTGAAGGACATTCTGCTCGGAGATTGGACGGACGGGATACTCTGCAGTATCGGCATGCCAGTGATTAAAGGCTCGGAGCGTTACAACTGTCAAGTA ATGTGTATGAATCGGAAGATTCTCATGATCCGCCCCAAACTATGGCTCGCAAACGACGGCAATTACAGGGAGCTCAGATGGTTTACGGCCTGGAAGCAAA GAGATCAGCTTCAAGAGTTTCAGCTCCCTCCAGATATTTCAGATGCCATTTCCCAGAAAACTGTTCCGTTTGGATACGGATTCATCCAATTTCAAGACAC AGCTGTTGCTGCTGAAGTTTGTGAGGAGCTATTTACCCCAATTCCACCGCACGCCGAGCTAGCACTTAACGGCGTTGAAGTTTTTATGAACGCAAGTGGA AGCCATCACCAGCTGAGAAAGCTTGATGTCCGTCTCCAAGCTTTCATGGGAGCTACGCATACTCGCGGAGGAGTGTATATGTACAGTAATCACCAAGGAT GCGATGGCGGCCGTCTTTATTATGATGGATGCTCTTGCGTTGTTGTAAATGGAGAAGTTGTTGCTCAAGGTTCGCAGTTTTCGTTGAGAGATGTCGAGGT TGTGGTTGCTCAAGTGGATCTTGATGCGGTTGCTAGTCTGAGAGGATCCATAAGCAGTTTCCAAGAACAAGCCAGTTGTAAAACCAGTGTTTCGTCTGTA GCAGCACCATACAGTTTGTGTCAGGCGTTTAACCTGAAAATGATTCTCTCTAACCCCATGAAGATCAGCTATCACTGTCCTGAGGAGGAAATAGCATTTG GCCCCGGTTGCTGGCTATGGGATTATTTGAGAAGAAGTGGAGCTTCTGGATTTTTGCTTCCTCTTTCTGGCGGAGCAGACAGCTCCTCTGTAGCGGCCAT AGTTGGTTGCATGTGCCAACTTGTTGTAAAAGACATTGCAAACGGAGATGAGCAAGTTAAAGCTGACGCGATCCGCATTGGACACTACACGGATGGCCAG TTTCCCACCGACAGCAAAGAATTTGCGAGGCGTATATTTTACACGGTGTTTATGGGAACTGAAAATAGTTCTGATGCTACGAGAACCCGGGCAAAGGTGC TAGCAGATGAGATAGGTTCATGGCATCTTGATGTTTCGATAGATGGGGTTATATCTGCATTACTTTCCTTGTTTCAAACCCTTACAGGAAAGCGACCACG CTATAAGGTAGATGGCGGTTCGAATATCGAGAACCTAGGTCTGCAGAATATTCAAGCTCGGTTAAGAATGGTACTTGCATTCATGTTAGCCTCACTACTG CCATGGGTTCACAGTAAACCTGGATTCTACCTCGTTTTGGGTAGCTCGAATGTTGATGAAGGCTTGCGAGGTTATTTGACTAAGTATGATTGCAGCTCAG CGGATATAAATCCGATTGGGAGTATAAGTAAGCAGGACCTTCGGTCATTCCTACGATGGGCTGCTAAAGATCTTGGCTATTCATCCTTGGCGGAAATTGA AGCAGCTCCACCAACAGCTGAATTAGAGCCTATACGCTCAAACTATAGCCAGCTTGATGAAGTGGACATGGGAATGACCTACGAGGAGCTCTCAGTCTAC GGTAGATTGCGAAAGATTTTCCGTTGCGGACCAGTTTCGATGTTCAAGAATCTTTGCTACAAATGGGGATCAACTTCAACCCCATTAGAAGTGGCGGACA AAGTGAAACACTTCTTCAAGTACTACTCCATTAATCGACACAAAATGACGGTCTTAACTCCATCATACCACGCCGAGAGTTATTCGCCAGAGGACAACAG GTTCGACCTCCGCCAATTCCTCTACAATGCGAGGTGGCCATATCAGTTCCGGAAAATCGACCAGCTTGTCGAGGAACTAAACGGCGACAAAGTTGCCTTT GAAGGGAAGCCGGTAGGAATGGGAGTAGTTGGTGCAAGCTCTGGAGATCCCAAAGCTGGGTTTTAA
AA sequence Show only first row Show all	>Lus10017307 pacid=23140256 polypeptide=Lus10017307 locus=Lus10017307.g ID=Lus10017307.BGIv1.0 annot-version=v1.0 MRLLKLATCNLNQWAMDFDSNLNHIKESITRAKQAGAVIRLGPELEITGYGCEDHFLELDTISHSWECLKDILLGDWTDGILCSIGMPVIKGSERYNCQV MCMNRKILMIRPKLWLANDGNYRELRWFTAWKQRDQLQEFQLPPDISDAISQKTVPFGYGFIQFQDTAVAAEVCEELFTPIPPHAELALNGVEVFMNASG SHHQLRKLDVRLQAFMGATHTRGGVYMYSNHQGCDGGRLYYDGCSCVVVNGEVVAQGSQFSLRDVEVVVAQVDLDAVASLRGSISSFQEQASCKTSVSSV AAPYSLCQAFNLKMILSNPMKISYHCPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIANGDEQVKADAIRIGHYTDGQ FPTDSKEFARRIFYTVFMGTENSSDATRTRAKVLADEIGSWHLDVSIDGVISALLSLFQTLTGKRPRYKVDGGSNIENLGLQNIQARLRMVLAFMLASLL PWVHSKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRSFLRWAAKDLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVY GRLRKIFRCGPVSMFKNLCYKWGSTSTPLEVADKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDQLVEELNGDKVAF EGKPVGMGVVGASSGDPKAGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10017307 [exp]	0	1
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	3.2	0.8627
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	6.2	0.8562
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	7.2	0.8262
AT1G18160			Protein kinase superfamily pro...		Lus10038955 [exp]	8.7	0.8185
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	9.9	0.8375
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10043104 [exp]	10.0	0.8633
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10008849 [exp]	10.8	0.8303
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	11.2	0.8412
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	13.2	0.8504
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10016083 [exp]	13.3	0.7713

Compare expression of checked genes

Lus10017307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.