Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39550 86 / 4e-20 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT5G12210 43 / 3e-05 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2) AT3G12070 41 / 0.0002 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019318 [exp] 216 / 5e-72 AT2G39550 49 / 7e-07 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10000944 [exp] 86 / 5e-22 AT2G39550 76 / 2e-17 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10040303 [exp] 89 / 4e-21 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10018502 [exp] 40 / 0.0004 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10039714 [exp] 40 / 0.0004 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2) Lus10023422 [exp] 39 / 0.0007 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054500 [exp] 94 / 6e-23 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.013G012500 [exp] 41 / 0.0002 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.010G206001 [exp] 0 / 1 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10017310 pacid=23140267 polypeptide=Lus10017310 locus=Lus10017310.g ID=Lus10017310.BGIv1.0 annot-version=v1.0 ATGAAGCCAGGGGATTGTGCTAATAATATAGCTGCTTTTCTTTTTTCAGTTTTCTTCCCATTCATTTTGGAGCAGAAACAGATCTTCGATTCACTTACTG TGCTGATAAGTGATGTATCAGCCGCCATCTGTTACATGTTGGATGACTGGAGTGAGATGGACAAGGATAAAGCCACAGAGTACATCTTAAAATGCAAGGC ATATAATGGTGGCTTTGGGATGACTCCAGGTGCAGAATCCCATGATGACCTTTTGTCAAGCTGGCAGTGGAACTTCTTCCATACTGGATGTTCAGCTGCT GCTAGATTGGTGCTTACAGGTTTTTCTCCTCATATAACCTTTCTTAGCATCTTAACTTCAATTACAAACACCAAACTATCAGCTGAGACAAAGAGTGTAT CTAAATTAGCTTCTTTATTGCGCTACAGGCAAGCATTTGATGGTGGATTTCAAGATAAGCCGAGTGACACTTGCTATGCATTCGGGTATCCGCCTCTTTT CCTGAGTTCCATTTGA
AA sequence Show only first row Show all	>Lus10017310 pacid=23140267 polypeptide=Lus10017310 locus=Lus10017310.g ID=Lus10017310.BGIv1.0 annot-version=v1.0 MKPGDCANNIAAFLFSVFFPFILEQKQIFDSLTVLISDVSAAICYMLDDWSEMDKDKATEYILKCKAYNGGFGMTPGAESHDDLLSSWQWNFFHTGCSAA ARLVLTGFSPHITFLSILTSITNTKLSAETKSVSKLASLLRYRQAFDGGFQDKPSDTCYAFGYPPLFLSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10017310 [exp]	0	1
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	42.0	0.5220
					Lus10008145 [exp]	50.7	0.4584
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	63.7	0.4935

Compare expression of checked genes

Lus10017310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.