Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64600 143 / 3e-41 methyltransferases;copper ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017309 [exp] 174 / 3e-53 AT1G64600 635 / 0.0 methyltransferases;copper ion binding (.1) Lus10003205 [exp] 174 / 5e-53 AT1G64600 636 / 0.0 methyltransferases;copper ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086800 [exp] 144 / 7e-42 AT1G64600 642 / 0.0 methyltransferases;copper ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF09243 [flax] [poplar] Rsm22 Mitochondrial small ribosomal subunit Rsm22
Representative CDS sequence Show only first row Show all	>Lus10017311 pacid=23140230 polypeptide=Lus10017311 locus=Lus10017311.g ID=Lus10017311.BGIv1.0 annot-version=v1.0 ATGCCTCGTCGTCTCCGCAGCCTCCGCCGCGCCATCAAAAGATACCTCCGGGAATTGGAGGAGCCACCCATGAAGAAAAAGGTAGGGAGAAGGTCGCCGG ATTTTTCTCCGTCTAAGGTGCTGGATTTCGGCGCTGGTACTGGTTCAGTTTTCTGGGCTATGAAAGAAGTGTGGCCAAAATCAATCAAGAAGGTTAATCC GGCGGAACCTTCTCAGTCAATGCAGCGTGCAGGCCGAAGCCTTATTCAAGGAATGAAGGATTTGCCACTTATTCATGGCTATGAAAGCATTCAGGCATTA AGCAAAAACCTTAAGAAGTCTGAGAGAGAACATGACCTTGTAATTGCTGTAAGTTGTAATTCTTCTCAATTTCTGTAA
AA sequence Show only first row Show all	>Lus10017311 pacid=23140230 polypeptide=Lus10017311 locus=Lus10017311.g ID=Lus10017311.BGIv1.0 annot-version=v1.0 MPRRLRSLRRAIKRYLRELEEPPMKKKVGRRSPDFSPSKVLDFGAGTGSVFWAMKEVWPKSIKKVNPAEPSQSMQRAGRSLIQGMKDLPLIHGYESIQAL SKNLKKSEREHDLVIAVSCNSSQFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64600			methyltransferases;copper ion ...		Lus10017311 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	6.6	0.7432
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	14.8	0.7229
AT1G71760			unknown protein		Lus10004010 [exp]	19.5	0.7429
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004031 [exp]	20.4	0.6494
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	23.9	0.7127
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	31.1	0.7104
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	31.1	0.7035
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10037798 [exp]	40.6	0.7061
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	42.0	0.6006
AT1G72200			RING/U-box superfamily protein...		Lus10029794 [exp]	50.5	0.6030

Compare expression of checked genes

Lus10017311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.