Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64610 419 / 2e-138 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 407 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 400 / 2e-130 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 390 / 6e-127 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 360 / 1e-113 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 353 / 2e-110 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 326 / 6e-103 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 288 / 6e-86 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 276 / 2e-81 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 90 / 2e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003206 [exp] 995 / 0 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 809 / 0 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 801 / 0 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020846 [exp] 323 / 8e-102 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 305 / 6e-95 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 307 / 2e-92 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 307 / 7e-92 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011313 [exp] 287 / 6e-91 AT5G53500 129 / 1e-32 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022377 [exp] 276 / 2e-83 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144400 [exp] 651 / 0 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 634 / 0 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 508 / 9e-172 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 462 / 4e-154 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 421 / 4e-138 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 365 / 3e-117 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 363 / 1e-116 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 348 / 4e-108 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 309 / 2e-93 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 281 / 7e-83 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10017312 pacid=23140150 polypeptide=Lus10017312 locus=Lus10017312.g ID=Lus10017312.BGIv1.0 annot-version=v1.0 ATGGATAGCTATACTGCGGAAGATAGGTTCTTTGATTCTAGAGACGAGTTGTCTGATTCGGCCGCCGACGGCAGTGGTGGTGGCGGTGTTGGTAATTTCC AGATTTGGACTGACAAGAATCTCGACAGTGTCCAGGATCGGCGGCGCAGCTTCCTCACATGGATGAATCTAATCAGTACGGACACCACAAGTAGTCATCC CTTTTCCAATTCGGATTCGGATTCGGATTCGGATTCGGATTCCCTGCAATTGGGAGCTGAAATTGACAACAGCTGCCAAGAGGCAAATTTGAGAAGTTGC GATTCCGAAGAAGATGGGTTCTGTTCCGACAACACTCTGTCTCGCTCTACTTCTTGTCACTCAGCTGAAGCTCGGGAGTCCTTTCCGGATAAGGATTTCG TGTGCAAGATTCGAAATTTAGACGACGGGAGGGAGTTCGTCGTCGAAGAGCTTGACCAAGGCGGAATCTTTGGTAGATTCCGGGAAGTGGGCTCCACCAA TCAATCCCTAACCTTGGAAGAGTTCCAGAGGAGTATCGGGTGGTCGCCTCTGATTCAACGGCTTCTCCGCAGATACTATGCCGACGAGGCAGCAAGAAAC AGATTAACAAGGAAGAAATCCGACAACAAGAAGGGTTGGCTCAGGAAGAAGAAACAGCTGGGATCTTTACCGCGGAATTCTGACAAGCGTGAGTATAATG CTCTGCAGAAAGTCAAGGTTCATACCCACAGGAAGAAGACAAAGCAGTTGTCTTCTGTCTTTACCGGACAGGAATTTCTGGCTCATAAGGGATCTATACT GACGATGAAGTTCAGTCTTGATGGGAAATACTTGGCTAGTGGTGGCGAAGACGGTGTTGTTAAGGTGTGGCGGGTTGTTGAGGATTATGATAGATTGGAT CAGTTTGATGATGATGATGATCCTTGTTCATCAGAGTCAACTTGTGTTGTTTTGCCGGAAAAGGTGTTCAGGGTTCTGGAGAAGCCTGTTCATGAGTTCA AGGGACACTCCGGCGAGGTTCTCGATCTCTCCTGGTCTAACCAGAAGTATCTCCTGTCGTCCTCTGATGATAATACAGTGCGCCTGTGGAAAGTGGGATG TGACAACTGCCTCAAAGTTTTTCAGCACAATAACTATGTAACGTGCGTTCAGTTCAATCCAGTGGATGAAGACTACTTCATCAGTGGATCTATAGATGGG AAAGTCCGGATTTGGGAAGTGTCTGGATGTCAGGTTGTCAGTTATACCGACATCAGAGAAATCGTTACTGCTATCGCTTATCGTCCTGGCGGAGAGGGAG CTATCGTGGGTACAATGTCTGGGAACTGCACTTTCTACGAGATCATAGATAATAAGATGAGACATGATACTATAGTATGTTCGCAAGGGAGAACGAAACT GCCTGGCAAGAGAATAACCAGCTTTGAGTTTTCTCCTAGCGATCCGAGTAGAGTGATTGTCACGTCAGCTGATTCGCTTGTGCGAGTTCTTTGCAGCACC GATGTCATTTGCAAATTTCGAGTTTCGCGCCTCCGGATTGCAACAAACCAAATGCACGCTGCTTTTTCTTCAGATGGGAAGAGTGTTGTCTCAACAAGCG ACGACTCAAATGTCTACATATGGAACTACGACAAACAGGAGAAAAAACCTCCGTCTCGAGCTAAGCTTATCCGCTCCTACGAGAGCTTCGTTTCCCCTAA TGCATCACTCGCAATACCTTGGCGCGGGATCGAGACTGCGCCAGGTGGCACAATGTCGTCCCCACAACCCCACAAGCGTAGCATCATATCGTCGCCGGAT TGTTTCAACATCACTCGCGGGCTTTTGTTGGATTCTCTGTCCAGGGGAGCTGCCACCTGGCCAGAGGAGAATCTTCCCGGTTTGAAACCGGTCAGATCCG AGTTGAAGTTGAATTCTCAGATGTGGGGTATGGTGATTGTTACTGCTGGGTGGGACGGACGGATCAGAACGTACCTCAATTACGGGCTACCTGTGCGAGT CTGA
AA sequence Show only first row Show all	>Lus10017312 pacid=23140150 polypeptide=Lus10017312 locus=Lus10017312.g ID=Lus10017312.BGIv1.0 annot-version=v1.0 MDSYTAEDRFFDSRDELSDSAADGSGGGGVGNFQIWTDKNLDSVQDRRRSFLTWMNLISTDTTSSHPFSNSDSDSDSDSDSLQLGAEIDNSCQEANLRSC DSEEDGFCSDNTLSRSTSCHSAEARESFPDKDFVCKIRNLDDGREFVVEELDQGGIFGRFREVGSTNQSLTLEEFQRSIGWSPLIQRLLRRYYADEAARN RLTRKKSDNKKGWLRKKKQLGSLPRNSDKREYNALQKVKVHTHRKKTKQLSSVFTGQEFLAHKGSILTMKFSLDGKYLASGGEDGVVKVWRVVEDYDRLD QFDDDDDPCSSESTCVVLPEKVFRVLEKPVHEFKGHSGEVLDLSWSNQKYLLSSSDDNTVRLWKVGCDNCLKVFQHNNYVTCVQFNPVDEDYFISGSIDG KVRIWEVSGCQVVSYTDIREIVTAIAYRPGGEGAIVGTMSGNCTFYEIIDNKMRHDTIVCSQGRTKLPGKRITSFEFSPSDPSRVIVTSADSLVRVLCST DVICKFRVSRLRIATNQMHAAFSSDGKSVVSTSDDSNVYIWNYDKQEKKPPSRAKLIRSYESFVSPNASLAIPWRGIETAPGGTMSSPQPHKRSIISSPD CFNITRGLLLDSLSRGAATWPEENLPGLKPVRSELKLNSQMWGMVIVTAGWDGRIRTYLNYGLPVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	2.6	0.8980
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	3.5	0.8909
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	4.2	0.8512
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	4.5	0.8613
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	6.0	0.8391
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	6.6	0.8127
					Lus10013622 [exp]	7.5	0.8190
					Lus10022031 [exp]	7.9	0.8619
					Lus10026392 [exp]	8.0	0.7995
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10029882 [exp]	8.5	0.8480

Compare expression of checked genes

Lus10017312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.