Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42000 182 / 4e-60 ORMDL family protein (.1.2) AT1G01230 174 / 1e-56 ORMDL family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003209 [exp] 211 / 8e-72 AT5G42000 194 / 2e-65 ORMDL family protein (.1.2) Lus10033219 [exp] 202 / 1e-67 AT5G42000 271 / 5e-95 ORMDL family protein (.1.2) Lus10023031 [exp] 200 / 7e-67 AT5G42000 270 / 1e-94 ORMDL family protein (.1.2) Lus10005980 [exp] 171 / 2e-55 AT1G01230 295 / 1e-104 ORMDL family protein (.1) Lus10030232 [exp] 172 / 1e-50 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144600 [exp] 186 / 1e-61 AT5G42000 281 / 8e-99 ORMDL family protein (.1.2) Potri.001G086300 [exp] 177 / 3e-58 AT5G42000 273 / 1e-95 ORMDL family protein (.1.2) Potri.014G101000 [exp] 172 / 5e-56 AT1G01230 285 / 3e-100 ORMDL family protein (.1) Potri.002G174400 [exp] 169 / 9e-55 AT1G01230 254 / 3e-88 ORMDL family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [flax] [poplar] ORMDL ORMDL family
Representative CDS sequence Show only first row Show all	>Lus10017314 pacid=23140175 polypeptide=Lus10017314 locus=Lus10017314.g ID=Lus10017314.BGIv1.0 annot-version=v1.0 ATGTACGTGAGAGCAGATCCGCCGACGGATGTGAATCGGAACACCGAGTGGTTCACCTATCCCGGCGTCTGGACTACCTACATCATCATCCTCTTCACCT CCTGGTTCATGGTCCTCTGCCTCTTCGGCTGCTCTCCCGGCACCGCTTGGACCGTCGTCCATCTCGCCCATTTCCTCGTTACCTATCATTGTTTTCACTG GAAGAAGGGGACTCCTTTCGCCGACGACCAAGGTATCTACAATGGGTTGACTTGGTGGGAACAAATTGAGAACGGGAAGCAACTCACACGCAATAGGAAG TTCCTCACTGTTGTACCAGTTGTTCTGTCAGTGTTCTTCCTTTCTCTTCTTTTGAACTTCTTACCAGCTGAACAAGTGTTAATGAATCAGAATTACCCTT TTAAGCATCTCTCTGGCTTCCTTACCTAG
AA sequence Show only first row Show all	>Lus10017314 pacid=23140175 polypeptide=Lus10017314 locus=Lus10017314.g ID=Lus10017314.BGIv1.0 annot-version=v1.0 MYVRADPPTDVNRNTEWFTYPGVWTTYIIILFTSWFMVLCLFGCSPGTAWTVVHLAHFLVTYHCFHWKKGTPFADDQGIYNGLTWWEQIENGKQLTRNRK FLTVVPVVLSVFFLSLLLNFLPAEQVLMNQNYPFKHLSGFLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42000			ORMDL family protein (.1.2)		Lus10017314 [exp]	0	1
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	4.9	0.7826
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10009553 [exp]	6.2	0.8095
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	8.2	0.8109
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	10.6	0.7793
AT1G27480			alpha/beta-Hydrolases superfam...		Lus10007728 [exp]	15.9	0.7229
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10041410 [exp]	17.7	0.7413
AT1G27290			unknown protein		Lus10015767 [exp]	23.0	0.7589
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	26.2	0.7414
AT3G53810			Concanavalin A-like lectin pro...		Lus10040773 [exp]	31.1	0.7079
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	33.5	0.7313

Compare expression of checked genes

Lus10017314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.