Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61820 436 / 1e-150 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003210 [exp] 794 / 0 AT5G61820 431 / 1e-148 unknown protein Lus10004249 [exp] 496 / 5e-175 AT5G61820 435 / 2e-150 unknown protein Lus10042158 [exp] 486 / 1e-170 AT5G61820 415 / 1e-142 unknown protein Lus10033851 [exp] 330 / 7e-109 AT5G61820 316 / 6e-103 unknown protein Lus10015933 [exp] 322 / 3e-106 AT5G61820 306 / 7e-100 unknown protein Lus10017315 [exp] 199 / 1e-62 AT5G61820 130 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108600 [exp] 503 / 6e-177 AT5G61820 477 / 3e-166 unknown protein Potri.015G108500 [exp] 486 / 2e-170 AT5G61820 470 / 2e-163 unknown protein Potri.015G108700 [exp] 477 / 9e-167 AT5G61820 453 / 5e-157 unknown protein Potri.015G108800 [exp] 476 / 3e-166 AT5G61820 468 / 7e-163 unknown protein Potri.012G110300 [exp] 346 / 2e-117 AT5G61820 366 / 9e-125 unknown protein Potri.012G110600 [exp] 167 / 3e-49 AT5G61820 153 / 4e-44 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07712 [flax] [poplar] SURNod19 Stress up-regulated Nod 19
Representative CDS sequence Show only first row Show all	>Lus10017316 pacid=23140188 polypeptide=Lus10017316 locus=Lus10017316.g ID=Lus10017316.BGIv1.0 annot-version=v1.0 ATGGATTACTTGCAATTTGTACTGGTCATTGCATCAGTAATTGCTTCACAAGCTGTTCTAGGAAACGGGTATTCCATCAAATCCGCTACTTACTTAACAC CGGAGTTCGTCTTAGGACCAGGATCGGTGGAGAACAGGGTTTACCTTAGCATCGATTTCCCAACAGGTCACATCGGTATCAAGAGCTTCGATGCCGAAGT CGTTGACCAGCTCGGGAACCCCATCCCTCTCCACGAAACCTACCTTCATCACTGGGTTTTAGATAGATACCGTATCTCCAAGAGTAACAATTCTACTGGG ACAATTGTTAGAAACAGTGGGATTTGTCAAGGGAATTCTATTGGGCAGTACTACGGGGTTGGATCCGAGACGAGGAAGACATCTACTCGTGTTCCTGATC CTTACGCAATCCCAGTTGGGGATCCTGCTGAGATTCCGGATGGTTACGAGGAGAAATGGCTGCTGAATGTTCATGCTATTGATACTAGGGGTGTTGAGGA TCGATTGGGCTGCACTGAGTGTCTGTGTAGCTTGTATAATGTTACCAGGGATAACTATGTTGGAGGTTTGCAGTGCTGTGAAGATCACAGTCAGTGTAAG CTCAAAGACGGGTTTGATCAGCAGTTTCCTAGGAGGAGCTTGTATTTGAGATATACAGTGAAGTGGGTTGACTGGAATGATGCTGATGGGATTCTTCCAG TTCAGATTTTCATCTTTGATGTTACTGATACCGGTAAAAGGCAATTGGACTCCCCATTAGAAGGTTGCAAGGTTGAATACAACGTCGCATCATGCGAGAC TCATGGCTGGTGCGTCGACGTCAAAAGGACACATGTCAGCTTACCGACTAGTGGCTATGTCGTCTACGGTGTCGCCCACCAGCACACCGGAGGAATGGGC TCAACCCTCTACCGCAAGGATGGGGAAGCCATATGCAACTCTACTCCGATGTACGGTACCGGAGACGAGCCAGGGAACGAGGAGGGTTACATAGTAGGGA TGACCACCTGCTACCCGGAACCGGGATCAGTGAAGATAACAGCTGGGGAAGAGCTAGTTCTGGAATCAAACTATACAAGTACCAGCACTAGGGGACACAT AGGAGTTATGGCGTTGTTCTATATTCTGGTTGCTGACCAAGTACCACCAACATCAAGCATGGCCTCGTTGCACGATCCTGTTACTCTGTTCGATGAGTTG ACTGCGAATGCATGGACGGTCCCGGCTGTATTGGGAGTAGCGGTGGTTGTTGTTGCTGCTGGGTTTGGTGTTTGGTTGAAGACGAGGAGAGAAACTGAAG ATGGGTACCATGTTATTTCAGCATAA
AA sequence Show only first row Show all	>Lus10017316 pacid=23140188 polypeptide=Lus10017316 locus=Lus10017316.g ID=Lus10017316.BGIv1.0 annot-version=v1.0 MDYLQFVLVIASVIASQAVLGNGYSIKSATYLTPEFVLGPGSVENRVYLSIDFPTGHIGIKSFDAEVVDQLGNPIPLHETYLHHWVLDRYRISKSNNSTG TIVRNSGICQGNSIGQYYGVGSETRKTSTRVPDPYAIPVGDPAEIPDGYEEKWLLNVHAIDTRGVEDRLGCTECLCSLYNVTRDNYVGGLQCCEDHSQCK LKDGFDQQFPRRSLYLRYTVKWVDWNDADGILPVQIFIFDVTDTGKRQLDSPLEGCKVEYNVASCETHGWCVDVKRTHVSLPTSGYVVYGVAHQHTGGMG STLYRKDGEAICNSTPMYGTGDEPGNEEGYIVGMTTCYPEPGSVKITAGEELVLESNYTSTSTRGHIGVMALFYILVADQVPPTSSMASLHDPVTLFDEL TANAWTVPAVLGVAVVVVAAGFGVWLKTRRETEDGYHVISA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61820			unknown protein		Lus10017316 [exp]	0	1
AT5G61820			unknown protein		Lus10017315 [exp]	1.0	0.9875
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	2.0	0.9671
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	2.4	0.9752
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	3.0	0.9740
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	5.5	0.9614
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	5.7	0.9599
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	6.3	0.9642
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	6.5	0.9654
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	6.7	0.9541
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	8.4	0.9671

Compare expression of checked genes

Lus10017316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.