Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10790 219 / 6e-67 UBX domain-containing protein (.1) AT5G63830 128 / 3e-33 HIT-type Zinc finger family protein (.1) AT4G11740 49 / 4e-06 SAY1 Ubiquitin-like superfamily protein (.1) AT4G00752 48 / 7e-06 UBX domain-containing protein (.1) AT4G23040 46 / 2e-05 Ubiquitin-like superfamily protein (.1) AT4G28820 41 / 0.0005 HIT-type Zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003214 [exp] 447 / 2e-156 AT4G10790 525 / 0.0 UBX domain-containing protein (.1) Lus10003211 [exp] 187 / 2e-55 AT5G63830 410 / 5e-142 HIT-type Zinc finger family protein (.1) Lus10027684 [exp] 112 / 7e-28 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10039951 [exp] 99 / 2e-23 AT4G10790 117 / 2e-29 UBX domain-containing protein (.1) Lus10029591 [exp] 51 / 1e-06 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 49 / 4e-06 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 47 / 3e-05 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145200 [exp] 237 / 8e-74 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 232 / 7e-72 AT4G10790 520 / 0.0 UBX domain-containing protein (.1) Potri.003G145100 [exp] 156 / 2e-43 AT5G63830 396 / 3e-136 HIT-type Zinc finger family protein (.1) Potri.015G080200 [exp] 132 / 6e-35 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.003G122300 [exp] 53 / 2e-07 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 51 / 1e-06 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 47 / 1e-05 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10017317 pacid=23140262 polypeptide=Lus10017317 locus=Lus10017317.g ID=Lus10017317.BGIv1.0 annot-version=v1.0 ATGGAGCAGACAATAATCACATCGGAGAAAGCTTCACATGCCTCGCCGCTGGATCCACCGTCCCGCATCATCTGCCACGTATGCCAGAAGCAGTTCTCGC AGTATACTTGTCCTCGATGCAATTCGCGATACTGTTCTTTGCAGTGCTACAAGTCCCATAGTGTCTGTTGCACTGAATCGTTTATGCGGGAAAACGTAGT GGGGGAGCTGAAGCAGCTGAAAACGGGCGATGAAAGTAAGCGCAAGATGCTGGACATACTGAAACGCGTTCATTCTGAGGAAGAAGAGATGGAGACCATG GATGATGATGCATTTGAGAGGGAGTATGGCTCCAGAGGTCCCAACTTCGTGACGGAGGGTTTCATGGACGCTCTTCAGCGGTCTAGAAACTCATTCAAGC TGTTGTTTGTCTATTTGCATTCCCCCGATCACTCGGACAGTCCAGGATTCTGCCAGAGAACTCTGTGTTCGGAGGTACTATCTGAGTTCATTAACCAGAA TTTCGTTGCCTGGGGAGGTAGTATTAGAGCTAGTGAAGGGTTCAAGATGAGCAATAGCTTAAAGGCCTCAAGATATCCGTTTTGTGCTGTGGTTATGCCT GCTACTAATCAGAGGATCGCATTGCTTCAACAGATTGAAGGTCCAAAATCTCCGGAAGAAATGCTTGTACTACTACAAAGAGTGCTTGAAGAAAGCGCGC CAGCTAGGGAGCGTCAGAGGATTGAAGAACAAGAACGACTCGAAAGAGAGGCTGCCGACGCGGAGAGGAAGCTCAAGGAAGAAGAGGAAGCCCGGGAAAG AGCGGCACAAGAGGCTGCCAAACGAGAGGCTGCTCGTGCCAGAATGCGAGAAGAGAAAGCCTTATCACTTGGTGTCGAGCCTGCGAAAGGACCCGATGTC ACACAGGTATTGGTTCGGTTCCCTAACGGAGAACGGAAAGAGAGGAGGTTCAATAACAGCACTGCTACCGTACAGACTCTTTACGACTACGTCGATTCCT CGGGGTGTTTAGGTGACGTAGAAGATTATAGCCTCGTTTCGAATTTCCCACGAACTGTTTATGGGAACGAGAAGCGAGCGTTGACCTTGAAAGAAGCGGG ATTGCATCCGCAGGCCAGTCTTTTTGTGGAGCTGAACTAA
AA sequence Show only first row Show all	>Lus10017317 pacid=23140262 polypeptide=Lus10017317 locus=Lus10017317.g ID=Lus10017317.BGIv1.0 annot-version=v1.0 MEQTIITSEKASHASPLDPPSRIICHVCQKQFSQYTCPRCNSRYCSLQCYKSHSVCCTESFMRENVVGELKQLKTGDESKRKMLDILKRVHSEEEEMETM DDDAFEREYGSRGPNFVTEGFMDALQRSRNSFKLLFVYLHSPDHSDSPGFCQRTLCSEVLSEFINQNFVAWGGSIRASEGFKMSNSLKASRYPFCAVVMP ATNQRIALLQQIEGPKSPEEMLVLLQRVLEESAPARERQRIEEQERLEREAADAERKLKEEEEARERAAQEAAKREAARARMREEKALSLGVEPAKGPDV TQVLVRFPNGERKERRFNNSTATVQTLYDYVDSSGCLGDVEDYSLVSNFPRTVYGNEKRALTLKEAGLHPQASLFVELN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	0	1
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	2.0	0.9109
AT3G58030			RING/U-box superfamily protein...		Lus10021063 [exp]	3.5	0.8897
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	5.1	0.8879
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	6.2	0.9211
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	6.3	0.8836
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	7.1	0.8984
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	13.7	0.9071
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	14.0	0.8958
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	16.3	0.8840
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000012 [exp]	18.7	0.8650

Compare expression of checked genes

Lus10017317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.