Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41990 553 / 0 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 530 / 0 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT3G18750 499 / 7e-172 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 494 / 5e-170 WNK7 Protein kinase superfamily protein (.1.2) AT3G48260 439 / 4e-149 WNK3 with no lysine (K) kinase 3 (.1) AT5G28080 426 / 3e-144 WNK9 Protein kinase superfamily protein (.1.2) AT3G04910 432 / 6e-144 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G22420 427 / 2e-143 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G51630 413 / 2e-138 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 385 / 2e-127 ZIK2, WNK4 with no lysine (K) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003215 [exp] 939 / 0 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10033225 [exp] 716 / 0 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10000334 [exp] 689 / 0 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 539 / 0 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10005983 [exp] 489 / 6e-165 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10041947 [exp] 445 / 2e-150 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10020236 [exp] 438 / 3e-146 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 436 / 2e-145 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 435 / 3e-145 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145300 [exp] 602 / 0 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.001G085500 [exp] 580 / 0 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.014G101500 [exp] 525 / 2e-180 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.008G037200 [exp] 518 / 2e-179 AT5G41990 429 / 8e-145 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G057300 [exp] 505 / 1e-172 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G086700 [exp] 449 / 5e-152 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 448 / 1e-151 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G036300 [exp] 444 / 5e-148 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 443 / 1e-147 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G225000 [exp] 427 / 3e-147 AT3G18750 389 / 9e-133 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017318 pacid=23140182 polypeptide=Lus10017318 locus=Lus10017318.g ID=Lus10017318.BGIv1.0 annot-version=v1.0 ATGGCTGAGTCTAGGGCCTGTGATATAACCGCGCCGAAACAGTTCGATTGGTATTCGATCTCCGCCGACGATTTCCAATTGCTGGCCTCCAGTATCATGA TTCTTTTTAGTATGGGGGATTCTAGTCCTTTTGACGATGGTGCGGTTGTGGAAACAGATCCGACTGGTCGTTACATTCGGTATGATGATATCTTGGGCAG AGGGGCATTCAAGACTGTATATAAGGCATTTGATGAGGTTAACGGCATTGAAGTTGCTTGGAACCAAATGAATGTTGAAGATGCATTACAGACGCCAGAA CAGCTGGAGAGGCTGTATTCTGAGGTTCATCTGCTTAAATCTTTGAAGAATGTAAATATAATCAAGTCCTATCACTCTTGGGTGGATGACAAGACCGGAA CTATCAACATGATAACAGAGCTGTTCACTTCTGGCAGTTTGAGGCAATATCGCAAGAAACATAAGAATGTTGATTTGAAGGCTATCAAAAACTGGGCCAG ACAGATTCTTAGAGGCTTACACTACTTGCACAGTCACAATCCTCCTATTATTCATCGCGATTTGAAATGTGACAATGTGTTTGTCAATGGCAACACTGGA GAAGTTAAAATCGGAGATCTTGGGTTAGCCACAATCCTGCAGCAGCCAACTGCCCGAAGTGTTATAGGTACTCCTGAATTCATGGCTCCAGAGCTCTACG ATGAAGAATACACTGAACTCGTTGACATCTATTCTTTCGGCATGTGCATGCTAGAGTTGGTTACTTTTGAATACCCTTACTGCGAATGCAGAAATCCAGC ACAGATTTACAAGAAAGTTTCCTCGGGTGTGAAGCCAGCCTCCCTTGCTAAAGTCGATAACCCTCAAGTTAAGGAGTTCATAGAGAAGTGTTTAGTCCCA GCATCTGCGAGACTACCTGCAATTGAGCTCCTTAAAGACCCCTTTTTGGCAACTGAGAGTGCAAAGGAGGTCTCTAATTCTCTGAAGCTGTCGCTTCCAT CAGAACCATTTGCAATGGAAATAGATGGTAATAGCAAGAAGTCATCAAAAACTTCGGGCACGGAAAGCATGGTCGAACCTATGCAAGTCTCACCTGTAGA AGTTGAGAAATACACTGAGAGCCATGGATTCAGATTAAGAGGGGTGAAAAATGATGACGATAATACAATCTCGATGTCTCTCCACATTTCAGATCCATCC GGACGAGGAAGGTACATACACTTCTCCTTTTTTCTCGACTCAGATACCACTCTCACAATAGCAGAGGAGATGGTTGAACAACTCGTACTGTCGAGCGAAG ATGTCGCTGTCATTGCTGAGTTAATAGACAGCTTGATAGCGAAACTCAGTGCTAGCAAGGATCATTCGCTTACCAGTGCAATAAGTATCCAGAACGGTTC ATATGGCATACAGAGCAACTCAACTTCAAACACAGTTCGTAGCAGTAACGAGCAGGATAATTGGGCGATGATCAATTCCGATGTTACTGCCGACTTTTAC CTCTCACTCTCGTCGTGTTCGGACGCCATTTCGTCCTCCGACGTTCCTGCAGACCTGAGCTTGTCCAGTATGAGCTGTCTGTCCCTTGCTGAGAAAGAAA AGGAGGAAGATGAGCTGCTTCAGATGGAGCTTTCTGCAATTGATGTGCAGTATAATGTGGTTTTCCAAGAACTGTCGAGGATGAGGGAAGAAGCAGTGGA GAATGCTAAATTGAAGTGGATTGCCAGGAGAAAGATAGCTGTTGTGTGA
AA sequence Show only first row Show all	>Lus10017318 pacid=23140182 polypeptide=Lus10017318 locus=Lus10017318.g ID=Lus10017318.BGIv1.0 annot-version=v1.0 MAESRACDITAPKQFDWYSISADDFQLLASSIMILFSMGDSSPFDDGAVVETDPTGRYIRYDDILGRGAFKTVYKAFDEVNGIEVAWNQMNVEDALQTPE QLERLYSEVHLLKSLKNVNIIKSYHSWVDDKTGTINMITELFTSGSLRQYRKKHKNVDLKAIKNWARQILRGLHYLHSHNPPIIHRDLKCDNVFVNGNTG EVKIGDLGLATILQQPTARSVIGTPEFMAPELYDEEYTELVDIYSFGMCMLELVTFEYPYCECRNPAQIYKKVSSGVKPASLAKVDNPQVKEFIEKCLVP ASARLPAIELLKDPFLATESAKEVSNSLKLSLPSEPFAMEIDGNSKKSSKTSGTESMVEPMQVSPVEVEKYTESHGFRLRGVKNDDDNTISMSLHISDPS GRGRYIHFSFFLDSDTTLTIAEEMVEQLVLSSEDVAVIAELIDSLIAKLSASKDHSLTSAISIQNGSYGIQSNSTSNTVRSSNEQDNWAMINSDVTADFY LSLSSCSDAISSSDVPADLSLSSMSCLSLAEKEKEEDELLQMELSAIDVQYNVVFQELSRMREEAVENAKLKWIARRKIAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	0	1
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10003215 [exp]	1.0	0.9422
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	4.7	0.8891
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	5.9	0.9056
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	7.7	0.9107
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	9.2	0.8913
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	10.0	0.8921
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	10.9	0.9123
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	11.0	0.9118
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10042608 [exp]	14.7	0.9030
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	15.0	0.8973

Compare expression of checked genes

Lus10017318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.