Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29010 307 / 2e-103 Biotin/lipoate A/B protein ligase family (.1) AT4G10770 121 / 1e-29 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G64410 94 / 2e-20 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 91 / 2e-19 ATOPT2 oligopeptide transporter 2 (.1) AT4G27730 87 / 2e-18 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 87 / 4e-18 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 85 / 1e-17 ATOPT9 oligopeptide transporter 9 (.1) AT4G16370 69 / 3e-12 ATOPT3 oligopeptide transporter (.1) AT4G26590 61 / 1e-09 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 60 / 2e-09 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003218 [exp] 485 / 3e-173 AT3G29010 364 / 6e-128 Biotin/lipoate A/B protein ligase family (.1) Lus10003217 [exp] 143 / 6e-37 AT4G10770 754 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10006581 [exp] 126 / 4e-31 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 102 / 5e-23 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10007770 [exp] 100 / 2e-22 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10028445 [exp] 95 / 1e-20 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10041897 [exp] 95 / 2e-20 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10035644 [exp] 85 / 5e-18 AT5G64410 538 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Lus10039075 [exp] 72 / 4e-13 AT4G16370 1304 / 0.0 oligopeptide transporter (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085100 [exp] 328 / 1e-111 AT3G29010 393 / 2e-139 Biotin/lipoate A/B protein ligase family (.1) Potri.003G145500 [exp] 130 / 2e-32 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 99 / 7e-22 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.005G150400 [exp] 95 / 1e-20 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.007G056900 [exp] 94 / 1e-20 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019500 [exp] 94 / 2e-20 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.009G079500 [exp] 92 / 8e-20 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 84 / 3e-17 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.006G006000 [exp] 70 / 2e-12 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.016G006500 [exp] 69 / 3e-12 AT4G16370 1305 / 0.0 oligopeptide transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein CL0040 [flax] [poplar] tRNA_synt_II PF03099 [flax] [poplar] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family
Representative CDS sequence Show only first row Show all	>Lus10017321 pacid=23140270 polypeptide=Lus10017321 locus=Lus10017321.g ID=Lus10017321.BGIv1.0 annot-version=v1.0 ATGCCAGTCCTCATCGGGGCCACCTCGGGGTGCATGCCTCCCGCTACTGCAGTCACTTTCACGAGCTGGGTGCTGGTCGGGTTCATGTCCGGGTTCGTGG TGTACAGGTACAAGCCAGAGCTGTGGCAGAGGTACAACTATGTGCTGTCGGGTTCGTTGGATGCCGGGCTGGCGTTTATGGGAGTGTTGCTGTATTTGTT TCTGGGTTTGGAGAATTTGAGCTTTGGCTTCTTGTCCTACTGCTCCAGAAACGAACCCTGCAAGCTTGAGATCCAGACCGGCAAGCTTCGATCAACGTCG ACTTGGTCAATCCCAACTCCGCCACCCGTCAGAGAGGAGACAGGAGACACAGCCCCCCGACGAGTCAATTCAAAGCTTCCGGCGACCCTCCCAATATCAG TCAGCCGGCGATATCAGTTCTCCTTATCCTCAATCATGACTGTTCTTCGCCACTCCGGAAAACTGAGTCTCCCGCTGATGAATCTGATCAGATCCGAAGG AATGCCGATACTGGAGCAACTCCAGCTGGAAGAGAAGCTCCTACGAACATCTACAGATAATTGGTGTATCATAAACGACGGAACAAATTCCCCTTCCATC GTCATGGGCGTATCAGGGAAACCTGCAGAGCTTCTCAATAGCAAGCTTGTATTAGCATCAGACGATAAAGTTCCTCCTGTTATCAGAAGGTTCACTGGTG GCGGGACTGTGATTGTCGACGGCGGGACGATTTTCGTCACTCTCATATGCAACAAGGACGATATTCCAAAGGTGCAGCCATACCCTCGTTCGATTATGCA ATGGAGTGGTGTTTTGTATGATCAAGTGTTTCGAGGGATAGGTGATTTCCATCTGCGGGAGAACGATTATGTATTTGGTGATCGAAAGTTCGGTGGGAAT GCTCAATCGATAACGAAAAGCCGGTGGATTCACCACACTTCGTTTCTGTGGGACTTCGAGGATCGGAATATGGAGTATCTGAAGCTGCCATCTCGTGCCC CTGGATACAGATTGGCGAGAGAGCATACGGAATTTGTGTGCCGAATGAGGGAGTATATGCAGAGAGCAGATTTCATGGATAGAACCATTGAAGCTCTTGA GAACTGGTTCTCAGTGCAACCAGTGAGCTTGGAAGCAGTTGGTTCCCTTGAGATGGCGAAATTCGGTCCCTCGACGAGAATTCTGTCAAAGCAAGAACTT GAAGCTGCTTTCGCATCTACATCTGGAAGAATGGATCACAGTCCCACACCTGGTTGTTAA
AA sequence Show only first row Show all	>Lus10017321 pacid=23140270 polypeptide=Lus10017321 locus=Lus10017321.g ID=Lus10017321.BGIv1.0 annot-version=v1.0 MPVLIGATSGCMPPATAVTFTSWVLVGFMSGFVVYRYKPELWQRYNYVLSGSLDAGLAFMGVLLYLFLGLENLSFGFLSYCSRNEPCKLEIQTGKLRSTS TWSIPTPPPVREETGDTAPRRVNSKLPATLPISVSRRYQFSLSSIMTVLRHSGKLSLPLMNLIRSEGMPILEQLQLEEKLLRTSTDNWCIINDGTNSPSI VMGVSGKPAELLNSKLVLASDDKVPPVIRRFTGGGTVIVDGGTIFVTLICNKDDIPKVQPYPRSIMQWSGVLYDQVFRGIGDFHLRENDYVFGDRKFGGN AQSITKSRWIHHTSFLWDFEDRNMEYLKLPSRAPGYRLAREHTEFVCRMREYMQRADFMDRTIEALENWFSVQPVSLEAVGSLEMAKFGPSTRILSKQEL EAAFASTSGRMDHSPTPGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	0	1
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	1.4	0.8526
AT3G02065			P-loop containing nucleoside t...		Lus10008509 [exp]	2.8	0.8358
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	6.5	0.8426
AT5G52410			unknown protein		Lus10038854 [exp]	7.7	0.8161
AT2G28370			Uncharacterised protein family...		Lus10021469 [exp]	11.0	0.8000
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	11.7	0.8493
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	15.9	0.8060
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	17.0	0.8029
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	19.7	0.7850
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	19.8	0.8037

Compare expression of checked genes

Lus10017321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.