Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64650 741 / 0 Major facilitator superfamily protein (.1.2) AT4G27720 730 / 0 Major facilitator superfamily protein (.1) AT3G49310 691 / 0 Major facilitator superfamily protein (.1) AT2G23093 77 / 8e-15 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003219 [exp] 823 / 0 AT1G64650 821 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033228 [exp] 766 / 0 AT1G64650 835 / 0.0 Major facilitator superfamily protein (.1.2) Lus10000337 [exp] 296 / 7e-99 AT1G64650 308 / 2e-105 Major facilitator superfamily protein (.1.2) Lus10000336 [exp] 175 / 8e-51 AT1G64650 170 / 1e-52 Major facilitator superfamily protein (.1.2) Lus10014854 [exp] 94 / 2e-20 AT2G23093 499 / 2e-175 Major facilitator superfamily protein (.1) Lus10011083 [exp] 93 / 5e-20 AT2G23093 502 / 1e-176 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145600 [exp] 728 / 0 AT1G64650 831 / 0.0 Major facilitator superfamily protein (.1.2) Potri.015G008100 [exp] 711 / 0 AT4G27720 827 / 0.0 Major facilitator superfamily protein (.1) Potri.012G020500 [exp] 709 / 0 AT4G27720 761 / 0.0 Major facilitator superfamily protein (.1) Potri.001G085032 [exp] 120 / 2e-32 AT1G64650 145 / 4e-43 Major facilitator superfamily protein (.1.2) Potri.007G052700 [exp] 96 / 4e-21 AT2G23093 425 / 3e-146 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05631 [flax] [poplar] MFS_5 Sugar-tranasporters, 12 TM
Representative CDS sequence Show only first row Show all	>Lus10017322 pacid=23140179 polypeptide=Lus10017322 locus=Lus10017322.g ID=Lus10017322.BGIv1.0 annot-version=v1.0 ATGGAGATCTTCTACTTCCTCGTCTTCGGAGGCCTCTCCGCCGTCGTGGCCGTCCTTGAATTCAGCAAAAACAACAAAGATCGCGTCAGCACTTCCTCCG TTTTCAATTCCTTCAAGAACAACTATCTCCTCGTCTACTCCCTCATGATGGCTGGAGACTGGTTGCAGGGTCCGTACGTTTACTACTTGTACCAACAGTA TGGTTATGGAAAGGGAGATATTGGCCAGCTCTTCATTGCTGGTTTTGGATCCTCTATGCTATTTGGCACCATTGTTGGTTCTCTTGCTGACCAACAGGGA CGAAAGAGAGCCTGTGTTACTTACTGCATCACTTACATTTTGAGTTGCGCCACCAAGCACTCTCCTCATTACAAGGTCTTGATGCTTGGACGTATACTCG GAGGCATTGCTACTTCTCTGTTATTTTCAGCCTTCGAGTCTTGGCTAGTTGCTGAACACTTCAAGAGAGGTTTTGAGGCGCAATGGCTTTCTCTAACGTT CTCCAAGGCCATATTCCTTGGCAACGGCTTAGTTGCTATTATTGCTGGATTGTTTGGAAATGTGCTAGTCGATGCACTGGCACTCGGACCTGTTGCTCCT TTTGATGCTGCCGCGTGCTTTCTTGCCATCGGTTTGGCAGTTATATTGTCTTCCTGGTCGGAAAATTACGGAGACCCTTCAGAAAACAAGGGTTTGATGT CACAATTCAGAGCAGCTGCTGTTGCCATCGCCTCTGATGAGAAGATTGCATTGTTGGGTGCCATCCAATCCCTGTTTGAAGGTTCGATGTACACCTTCGT GTTCCTGTGGACTCCTGCGCTGAGCCCCTACGGTGAGGACATCCCACACGGATTCATTTTTGCAACGTTCATGCTGGCTTCAATGTTGGGAAGTTCTGTG GCCTCCCGGTTGCTCGCCCGTTCGTCCCCAAAAGTCGAGAGTTATATGCAGATAGTGTTCTTGATCTCGGCAGCCGCCCTTATGCTTCCTGTTGTAACAA GTTTCTTAGTGGCGTCAACTGGAGTCAAAGGAGGAAGTATCTCGTTTTCTGGCTGCATCCAGCTTATCGGATTTTGCGTGTTTGAGGGTTGCGTCGGTCT ATTCTGGCCGTCAATCATGAAAATGCGATCCCAATACATCCCGGAGGAGGCCAGAAGTACCATCATGAACTTCTTCCGCATCCCTCTCAATATCTTTGTG TGCGTGGTGTTGTACAATGTTGATGCATTCCCAATCATTGTGATGTTCGGAATGTGCTCGATTTTCCTCTTTGTCGCTTCCCTTCTACAGCGCAGGCTGA TGTTCATTGTTGATCTTCAAAAATCAAGTAAGCTTGTAGATTTGCCTTCACTAGAAGGCATTTTAATCAGACGACTGGACAACAATGAAGGAATTGGGTA CAGAGGAAGAGCCACTAAACGCTTGAACGAATGCACTAACGAAGCGCTCCGAGATTCTTTTCGAAATTGCAAGCATACTTATTATACATCCTGGAAAGGA TTTGCCGGATTCGAGTGCCTCACTACTACACTTGCAGAAACAGAAGGGTTTAAAGGGCGCGACGAGAACTTAGACGATGATCAAGTGTAG
AA sequence Show only first row Show all	>Lus10017322 pacid=23140179 polypeptide=Lus10017322 locus=Lus10017322.g ID=Lus10017322.BGIv1.0 annot-version=v1.0 MEIFYFLVFGGLSAVVAVLEFSKNNKDRVSTSSVFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYQQYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADQQG RKRACVTYCITYILSCATKHSPHYKVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFEAQWLSLTFSKAIFLGNGLVAIIAGLFGNVLVDALALGPVAP FDAAACFLAIGLAVILSSWSENYGDPSENKGLMSQFRAAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPYGEDIPHGFIFATFMLASMLGSSV ASRLLARSSPKVESYMQIVFLISAAALMLPVVTSFLVASTGVKGGSISFSGCIQLIGFCVFEGCVGLFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFV CVVLYNVDAFPIIVMFGMCSIFLFVASLLQRRLMFIVDLQKSSKLVDLPSLEGILIRRLDNNEGIGYRGRATKRLNECTNEALRDSFRNCKHTYYTSWKG FAGFECLTTTLAETEGFKGRDENLDDDQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	0	1
AT1G64650			Major facilitator superfamily ...		Lus10003219 [exp]	1.4	0.9173
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	3.2	0.9158
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	3.5	0.9039
AT5G60760			P-loop containing nucleoside t...		Lus10021447 [exp]	4.5	0.8910
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	6.2	0.8631
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	6.2	0.9055
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	7.7	0.8811
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10014085 [exp]	8.3	0.8455
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	8.8	0.8432
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10034560 [exp]	9.2	0.8491

Compare expression of checked genes

Lus10017322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.