Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10750 415 / 5e-145 Phosphoenolpyruvate carboxylase family protein (.1) AT4G24080 256 / 1e-84 ALL1 aldolase like (.1) AT4G24070 67 / 4e-14 carbon-carbon lyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000224 [exp] 526 / 0 AT4G10750 409 / 3e-143 Phosphoenolpyruvate carboxylase family protein (.1) Lus10000223 [exp] 146 / 8e-43 AT4G10750 144 / 9e-43 Phosphoenolpyruvate carboxylase family protein (.1) Lus10003220 [exp] 87 / 4e-21 AT4G10750 93 / 5e-24 Phosphoenolpyruvate carboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145700 [exp] 435 / 5e-153 AT4G10750 435 / 2e-153 Phosphoenolpyruvate carboxylase family protein (.1) Potri.001G084900 [exp] 203 / 2e-16 AT4G10750 211 / 3e-08 Phosphoenolpyruvate carboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF03328 [flax] [poplar] HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family
Representative CDS sequence Show only first row Show all	>Lus10017323 pacid=23140235 polypeptide=Lus10017323 locus=Lus10017323.g ID=Lus10017323.BGIv1.0 annot-version=v1.0 ATGCCGACTCTCACTTCCCATCGTCTTCCCACTTCCTTCTTCACATCAAACCTCGCCGGAAGTTCCAAGATCAAAACGTTCCTCTGCAGCTCCAAATCCA AATCCTCCGTCAACTTCCATTTATCCTCCGCCGTATTCAAATCCTTAACTCATCTACGATACTCAGCTGGTTCCTCATCGGATCTATCATCGCCGGCTTC CGATTCGGCATCCATCACCTCCGCCGCCGTCTCATCTCAAAAGTCCATCAAGTCGCGACTCAGAGATGGAGAGACTCTCTACGGGCTCTTCCTACTCAGC TTCTCACCTACTCTCGCTGAGATCGCCGGCCTCTCCGGATACGATTTTGTCGTCGTTGATATGGAGCATGGACCTGGCGGGATTACCGAAGCTCTTCTCT GCATGCGTGCTCTAGCTGCTACGCAGACTCCGGCAATTTTGAGATTGCCGGAGAGTTCTCCTGCCTGGGCGAAGAAGGCTTTAGATCTAGGTCCACAAGG GATTATGTTCCCGATGGTGGATTCGGAAGAATCGGCGCGGAAAGCTGTGTCATACTGCCGATTCCCGCCGGCGGGGGTGCGTGGTTCGGGGGGTACCCCG CCGGCGGGGGTGCGTGGATCGGCGCATACGGTGGTGAGAGCTTCCAGCTACGGGATCGACGAAGGGTATTTGAGTAATTACGAGGAGGAGCTGCTGATTT TGTGCCAGGTTGAGAGCGAGGAAGGCGTGAAGAATGCAGGCGAGATCGCGGCCGTTGATGGGGTCGACTGCATCCAGATGGGCCCGCTGGATCTGAGCGC CAGCATGGGTTACTTGTGGGACCCGGGCCACAAGAAGGTCAGGCAGATGCTGCGGACGGCGGAGAAGACGGTGTTGGACTCCAAGCCTAACCGTAACGGT GGAGAAGGTGGTGGAGCCTACTTGTCCGGGTTCGCGATGCCGTTTGATGGGCCGGTTGATTTGAAAGCAAGAGGCTACCAAATGGTGTCCGGCGCCGTTG ACATCGGGCTGTTCCGGAGCGCCGCCGTGGAGGACGTGAGGAAGTTCCGTTTGAGCTTGACGGAGGGGGCCGATGAGGGAGATGAAGAAGGTCCTGACGA TGAAAAGTACTGGAGCGAGTAA
AA sequence Show only first row Show all	>Lus10017323 pacid=23140235 polypeptide=Lus10017323 locus=Lus10017323.g ID=Lus10017323.BGIv1.0 annot-version=v1.0 MPTLTSHRLPTSFFTSNLAGSSKIKTFLCSSKSKSSVNFHLSSAVFKSLTHLRYSAGSSSDLSSPASDSASITSAAVSSQKSIKSRLRDGETLYGLFLLS FSPTLAEIAGLSGYDFVVVDMEHGPGGITEALLCMRALAATQTPAILRLPESSPAWAKKALDLGPQGIMFPMVDSEESARKAVSYCRFPPAGVRGSGGTP PAGVRGSAHTVVRASSYGIDEGYLSNYEEELLILCQVESEEGVKNAGEIAAVDGVDCIQMGPLDLSASMGYLWDPGHKKVRQMLRTAEKTVLDSKPNRNG GEGGGAYLSGFAMPFDGPVDLKARGYQMVSGAVDIGLFRSAAVEDVRKFRLSLTEGADEGDEEGPDDEKYWSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	0	1
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000224 [exp]	3.5	0.8241
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	3.9	0.8821
AT2G26110			Protein of unknown function (D...		Lus10024988 [exp]	4.2	0.8615
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	5.5	0.8741
AT3G14067			Subtilase family protein (.1)		Lus10013154 [exp]	9.5	0.7854
AT1G14550			Peroxidase superfamily protein...		Lus10004218 [exp]	10.1	0.8179
AT5G17630			Nucleotide/sugar transporter f...		Lus10019209 [exp]	10.5	0.8526
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	11.3	0.8375
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	12.6	0.8592
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031278 [exp]	14.3	0.8506

Compare expression of checked genes

Lus10017323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.