Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41970 553 / 0 Metal-dependent protein hydrolase (.1) AT3G49320 496 / 2e-177 Metal-dependent protein hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033229 [exp] 583 / 0 AT5G41970 573 / 0.0 Metal-dependent protein hydrolase (.1) Lus10008867 [exp] 506 / 0 AT5G41970 507 / 0.0 Metal-dependent protein hydrolase (.1) Lus10000877 [exp] 474 / 3e-168 AT5G41970 456 / 9e-161 Metal-dependent protein hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145900 [exp] 574 / 0 AT5G41970 557 / 0.0 Metal-dependent protein hydrolase (.1) Potri.015G007900 [exp] 524 / 0 AT3G49320 525 / 0.0 Metal-dependent protein hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03690 [flax] [poplar] UPF0160 Uncharacterised protein family (UPF0160)
Representative CDS sequence Show only first row Show all	>Lus10017324 pacid=23140136 polypeptide=Lus10017324 locus=Lus10017324.g ID=Lus10017324.BGIv1.0 annot-version=v1.0 ATGGCGAATCTGCCGCCTAGGGTTTCTTCGCCGCCTTACTCGACGACTGCTTCCCCTGCTGACGGCGCTCCCGTAAAGCGCGTCGGAACTCACAATGGAA GTTTTCACTGCGACGAGGCTCTGGGCTGCTTCATGATTCGCCTCACCAGCAAGTTCGCCAACTCTGAAATCGTCCGCACCCGCGATCCCCAGGTACTGGA GACTCTGGATGCGGTGCTTGATGTTGGAGGTGTGTACGATCCGAACCGTGATCGGTATGATCACCACCAGAAGGGGTTTCAGGAGGTGTTTGGGCACGGA TTCTCCACCAAACTAAGTAGTGCTGGACTGGTTTACAAGCATTTCGGAAAGGAGATCATAGCCAAGGAGCTAGAGGTTGATGAAGAGCACCCGGATGTCC TCCGTTTGTTCCTTGCTGTTTACAAAAGCTTCATGGAGGCAATTGATGCTGTTGACAACGGAATCAACCAGTATGACACGGACAAGCCACCGAGATACGT AAATAACACTCACTTGTCGTCAAGGGTTGGGAGACTGAATCCGGACTGGACCGATCCAGATCAATCAGCTGAGAAAGAGAATGAGGCCTTCCTGCGAGCA ATGGCTCTGGCCGGCAGCGAGTTTCTTGATAGTCTTCGTTTCCATGCAAGGTCGTGGTTACCTGCACGTTCGGTAGTTCTCGAATGTCTCGCAGCTAGGT TCAACATCGATCCCAGCGGAGAAATCATGGTGTTAACAAGATTCTGCCCTTGGAAGCTTCATTTGTTTGAGCTCGAGGAGGAGATGAAGATTGAGCCTTC CATTAAATATGTTCTCTATGAGGACGATAGGAGCAAACAATGGCGAGTACAAGCTGTAGCAGCCTCTCCAGACAGCTTCGAAAGCCGGAAACCTCTCCCA GCTCAATGGCGAGGGATGCGAGACGACGATCTCTCGAAACAATCCGGAATCCCTGCTTGTGTTTTCGTCCACATGAGCGGGTTCATCGGAGGGAACCAAA GCTCCGAAGGCGCCCTCGCCATGGCTAAAGCTGCCCTCAAGCTCTGA
AA sequence Show only first row Show all	>Lus10017324 pacid=23140136 polypeptide=Lus10017324 locus=Lus10017324.g ID=Lus10017324.BGIv1.0 annot-version=v1.0 MANLPPRVSSPPYSTTASPADGAPVKRVGTHNGSFHCDEALGCFMIRLTSKFANSEIVRTRDPQVLETLDAVLDVGGVYDPNRDRYDHHQKGFQEVFGHG FSTKLSSAGLVYKHFGKEIIAKELEVDEEHPDVLRLFLAVYKSFMEAIDAVDNGINQYDTDKPPRYVNNTHLSSRVGRLNPDWTDPDQSAEKENEAFLRA MALAGSEFLDSLRFHARSWLPARSVVLECLAARFNIDPSGEIMVLTRFCPWKLHLFELEEEMKIEPSIKYVLYEDDRSKQWRVQAVAASPDSFESRKPLP AQWRGMRDDDLSKQSGIPACVFVHMSGFIGGNQSSEGALAMAKAALKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41970			Metal-dependent protein hydrol...		Lus10017324 [exp]	0	1
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10041732 [exp]	14.4	0.8326
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	23.9	0.8560
AT5G38720			unknown protein		Lus10008877 [exp]	26.5	0.8341
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	36.2	0.8437
AT1G58030		CAT2	cationic amino acid transporte...		Lus10000215 [exp]	62.7	0.8321
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10025988 [exp]	68.7	0.8310
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10009238 [exp]	72.7	0.8143
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10041802 [exp]	103.2	0.7857
AT1G34320			Protein of unknown function (D...		Lus10028708 [exp]	118.4	0.7834
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10011984 [exp]	121.4	0.7965

Compare expression of checked genes

Lus10017324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.