Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24090 243 / 7e-79 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084500 [exp] 281 / 8e-94 AT4G24090 310 / 2e-105 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017325 pacid=23140260 polypeptide=Lus10017325 locus=Lus10017325.g ID=Lus10017325.BGIv1.0 annot-version=v1.0 ATGGCGGCCAAGCAAGCTCTGCAATCCTTTTCGCCACTGAAACCAATAGTTTCAAGGTCGAGAATCACAAGCAGACCTCCTTCTTTGTCTACCTTATCAT GCAGCAAGTACCAACCATTACTGCTCTTCTTCAGTCCAGCTCCCGCCAGATCGACGGCCGTCGTCGCAAAATGCAGCGGCGGGGGAGAAGAAACAGGAGG AGGTGGTTATAATTTCAAAAACGCACTCACCGGCATGGTGGGGGAGGAAGTAGCGGAACTACTGGCCAAGGAAGAAAACAAGGCGCTGCTTGACGAGCTG GACAAGGCGTCACAAAGAGTGGAAATCGCACGGAGAGAGCTTAAGGAGATTGAAAGACAGGAAGTTGAGGCTAAGCAATTGCAGGAGTACGTCAACCAGC TTGAAACCAGAGCTTCTGAGATAGAAGAATGCCAGCAGGAGATCATTGCTGCGAGCGTTCTGGTGGAAGAAGCTGAGAAATCGCTTTCAGCTGGTTCGAA CCAAGGAGCAACCGAGAAAGATCTCGAGAGGGTGGAGTCGATAAAGGCAGCAGGAGTATCTGCACTCGTCGGATCACTTGCAGTTATTCCTGTGTCTCTG GCAGGAATAACTAGTTATGATCAGCTGTTACTTCCCATTGCAGCCACCTTCATAAGCTGTGCATTGTTCGGAGTAACCTTTCGGTATGCAGTCAGAAGAG ATCTCGATAACTTCCAGCTCAAGACAGGGACTTATGCTGCATTTGGCTTCGTGAAAGGGCTGGGAATGCTTGCCGGAGGAGCGCCGTTAGAACTCAAGAT TGAAAGCATCTTGTCTCATGGTGTTGATGGTGCAGTTTGTGTATCGCAGAGCGTTCTGGTTTTCGCCTTTTCTGCTGTTAGTCTGGATTACTGCTTCAAG GTGGGGCTTATAAGTCCATTTCCCCTGAAAGAATCATCCTCTTCACAAACTAATGCAGAGTAA
AA sequence Show only first row Show all	>Lus10017325 pacid=23140260 polypeptide=Lus10017325 locus=Lus10017325.g ID=Lus10017325.BGIv1.0 annot-version=v1.0 MAAKQALQSFSPLKPIVSRSRITSRPPSLSTLSCSKYQPLLLFFSPAPARSTAVVAKCSGGGEETGGGGYNFKNALTGMVGEEVAELLAKEENKALLDEL DKASQRVEIARRELKEIERQEVEAKQLQEYVNQLETRASEIEECQQEIIAASVLVEEAEKSLSAGSNQGATEKDLERVESIKAAGVSALVGSLAVIPVSL AGITSYDQLLLPIAATFISCALFGVTFRYAVRRDLDNFQLKTGTYAAFGFVKGLGMLAGGAPLELKIESILSHGVDGAVCVSQSVLVFAFSAVSLDYCFK VGLISPFPLKESSSSQTNAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24090			unknown protein		Lus10017325 [exp]	0	1
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	1.4	0.9110
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	2.0	0.8666
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	2.4	0.8800
AT2G03390			uvrB/uvrC motif-containing pro...		Lus10037120 [exp]	5.8	0.8340
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10034152 [exp]	12.0	0.8050
AT2G38570			unknown protein		Lus10014180 [exp]	13.4	0.8739
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	21.5	0.8438
AT3G12930			Lojap-related protein (.1)		Lus10027381 [exp]	22.2	0.8352
AT3G17930			unknown protein		Lus10042280 [exp]	23.7	0.8557
					Lus10042279 [exp]	24.2	0.8391

Compare expression of checked genes

Lus10017325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.