Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10730 823 / 0 Protein kinase superfamily protein (.1) AT4G24100 806 / 0 Protein kinase superfamily protein (.1) AT5G14720 510 / 3e-170 Protein kinase superfamily protein (.1) AT1G79640 494 / 6e-164 Protein kinase superfamily protein (.1.2) AT1G70430 428 / 2e-139 Protein kinase superfamily protein (.1) AT4G14480 294 / 7e-90 Protein kinase superfamily protein (.1) AT1G23700 279 / 3e-84 Protein kinase superfamily protein (.1) AT1G69220 214 / 3e-58 SIK1 Protein kinase superfamily protein (.1.2) AT1G53165 212 / 4e-58 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 210 / 1e-57 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001677 [exp] 1556 / 0 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 1025 / 0 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 997 / 0 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10014542 [exp] 506 / 2e-167 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 486 / 4e-161 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 477 / 4e-157 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000416 [exp] 474 / 3e-155 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021882 [exp] 298 / 3e-91 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10041162 [exp] 203 / 4e-59 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084700 [exp] 948 / 0 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 934 / 0 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 515 / 4e-172 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 501 / 4e-166 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G349300 [exp] 499 / 1e-165 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.008G163800 [exp] 318 / 3e-98 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 253 / 6e-75 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 254 / 2e-74 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.010G157400 [exp] 215 / 2e-58 AT1G69220 855 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G397600 [exp] 210 / 3e-57 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017326 pacid=23140162 polypeptide=Lus10017326 locus=Lus10017326.g ID=Lus10017326.BGIv1.0 annot-version=v1.0 ATGGGAGCTGGACAGAGGATGTATTCTGCCAATCCTAACGACTATAAGCTTCTTGAAGAAGTCGGTCATGGCGCGAGTGCCACGGTTCACAGAGCGATTT TTCTTCCATCGAATGAAGTCGTTGCTATTAAGTGCTTGGATCTCGATCGATGCAATAGCAATCTGGATGATATACGGAAAGAAGCTCAAACCATGACATT GATAGACCATCCAAATGTTATTAAGGCATTCTGTTCATTCGTCGTTGACCGGTATCTCTGGGTGGTCATGCCCTTCATGGCCGAGGGTTCTTGTTTGCAC CTTAGACAAATAGCATATACAGATGGATTTGAAGAAGCTGCTATCCGTTCGATTCTGAAAGAAACTCTTAAGGCCTTAGATTACCTACATTGTCAAGGGC ACATTCATCGTGATGTCAAGGCTGGAAATATACTATTGGATACTAATGGAATTGTAAAACTAGCTGATTTTGGTGTGTCTGCTTGCATGTTTGATACTGG TGACAGACAACGTGCTAGAAATACTTTTGTTGGAACTCCTTGCTGGATGGCACCTGAAGTCTTGCAGCCAGGAAGTTGGTATGATTCAAAGGCTGATATA TGGTCCTTTGGTATTACGGCGTTGGAGATGGCTCATGGTCATGCACCCTTCTCAAAATACCCTCCAATGAAGGTACTTCTGATGACCATACAGAATGCTC CTCCTGGACTTGATTATGATCGTGATAAAAAGTTTTCCAAGTCTTTTAAAGAGATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAGGAGGCCGACTGC AGATAAGTTGTTGAAACACTCATTTTTCAAGCATGTAAAGCCTCCAGAGCTGTCTGTGAAGAAATTGTTTGCGGATTTGCCTCCACTATGGAATCGAGTG AAAACATTACAGATTAAAGATGCTGCACAATTAGCTCTAAAAAGAATGCCCTCTGCTGATCAAGAAGCTCTATCACAGAGTGAGTACAAGCGAGGAGTTA GTGCCTGGAATTTTGATATTGAGGATCTGAAAGCCCAAGCATCATTGGTAAGAGATGATGATGACATCCCTGAGACTAAATGTGAAGATGAAAGCTTGAA ATTCTCTGGTGGCGATAAGGCTTTAACCAATGGGCATACTCATCATGTGAAGCATGATTACCCTTCTGAAATTCCTCAGCTAGAGCGTTCAACTGAAGCC TCACTATCTGAGAGCTTGAACCAAAAGGTCAAGCCTCTGGATAGTGATATACTAGAAGCAGGCCGAGAGAACATTGAAATCAACAGAAATGTCTCGAGCC TGGAGTTGGAAGCATCAACATCAGAAAAGGATTTGATGCAGTCCAAGGCTAAAGCAGTGAGAGGTCCTCAAACTCAGAGCGGGCCTCTCATGCCTGGTAA TGGATTAGGCCGGTCATCATTTGAAAGGGGTAGGAGTTCAGAAAGGTTTGAGAGTGAAGTGCAACCAACCAATGAAACACCCACGAGAAAAGCTCCAAGC TTTAGTGGTGCGTTGATGCTCCAAAACCGAACTTTAGCAAATAGTTTGTCGGCTGCCATTAAGTCACCTGGTGGATTAAGAGATCCTCTGGATGATAAGA CTAAGACTAATCTGGTACAAATCAAAGGGCGATTCTCAGTAACATCAGAAAATTTGGACCTTGCAAAGGATGTTCCCTCCAGTGCTGTTCAGCGCCGTTC CTCACAGACTTCACCCTTGCGAAAATCTGCTAGTATGGGTGATTGGGTACACGAGTCCAAGCCAACGCCGGTACTCCAATCACAAAAAGACGTTAGTAAC AGCAATCTACCTTCATCGGAACTCATGCTCCACCTTCAGAATCTTCTTCAACAGAACTCAAATCAGCAGGATCTCATTCTCAATTTGTTGAATAGCTTGC AACCAGAGGAGGTTCCGGACGCTGTACAAAATGGCAAGTTACCTCCATTGCCACGCTGTCAGGAGAGTAACGGAAGTGTTGTCGAAACTACTTCCGAGAG AGAACAGTTATTGATGCTGAAGATCTCGGAGCTTCATTCCAGGATATCCACTCTGACCGATGAACTAAACGCCGAAAGGCTAAAATCCGAACAAAAACTG CTGCTGAATCCGAGGATCTCTAGACCCGCCGGAGGAGGACTGCTATTATGCAGAGCGGAGCTTTTTCAGGACGCGCCGTTCGCGGCTGCTATCGGCACGT GTATGCTGAGTTCGCTGCTATTGCCTGCCGCTACACCACCTTCTGATGAGGAATCCGATTCTGGATTGGATACTACTGATGCTCGCTTGGCAGTTATGGG GATCATCAGCTTCGTCCCCTACTTCAATTGGCTGAGCTGGGTGTTTGCTTGGCTGGATACTGGGAAACGCCGCTATGCCGTCTACGCCCTTGTCTACCTC GCTCCGTACATCAGGTCGAATCTGTCACTTTTCCCTGAGGATTCATGGCTGCCTATTGCTAGTATTTTCCTCGGCGTCATTCACGTTCAGCTGGAAGCGA GTATTAAGAATGGAGATATTCAAGGATTTCAGCTCTTCAGTGAAGTTTCGAAGCTTCTTTCGTTCACGAAGGAGGAGATCGAGGACGGCATTACCGATGA TGATAGACTATTTGAGGGGAGGAAGAAAGGACATAGGGATCTGCCATCTGATATTGGCAAGAAGCGTGATGCTAAGAAGAAGCCTTCCTCGAAACACCAT GAACACTCAAATGGCGACTGGGATTAG
AA sequence Show only first row Show all	>Lus10017326 pacid=23140162 polypeptide=Lus10017326 locus=Lus10017326.g ID=Lus10017326.BGIv1.0 annot-version=v1.0 MGAGQRMYSANPNDYKLLEEVGHGASATVHRAIFLPSNEVVAIKCLDLDRCNSNLDDIRKEAQTMTLIDHPNVIKAFCSFVVDRYLWVVMPFMAEGSCLH LRQIAYTDGFEEAAIRSILKETLKALDYLHCQGHIHRDVKAGNILLDTNGIVKLADFGVSACMFDTGDRQRARNTFVGTPCWMAPEVLQPGSWYDSKADI WSFGITALEMAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTRRPTADKLLKHSFFKHVKPPELSVKKLFADLPPLWNRV KTLQIKDAAQLALKRMPSADQEALSQSEYKRGVSAWNFDIEDLKAQASLVRDDDDIPETKCEDESLKFSGGDKALTNGHTHHVKHDYPSEIPQLERSTEA SLSESLNQKVKPLDSDILEAGRENIEINRNVSSLELEASTSEKDLMQSKAKAVRGPQTQSGPLMPGNGLGRSSFERGRSSERFESEVQPTNETPTRKAPS FSGALMLQNRTLANSLSAAIKSPGGLRDPLDDKTKTNLVQIKGRFSVTSENLDLAKDVPSSAVQRRSSQTSPLRKSASMGDWVHESKPTPVLQSQKDVSN SNLPSSELMLHLQNLLQQNSNQQDLILNLLNSLQPEEVPDAVQNGKLPPLPRCQESNGSVVETTSEREQLLMLKISELHSRISTLTDELNAERLKSEQKL LLNPRISRPAGGGLLLCRAELFQDAPFAAAIGTCMLSSLLLPAATPPSDEESDSGLDTTDARLAVMGIISFVPYFNWLSWVFAWLDTGKRRYAVYALVYL APYIRSNLSLFPEDSWLPIASIFLGVIHVQLEASIKNGDIQGFQLFSEVSKLLSFTKEEIEDGITDDDRLFEGRKKGHRDLPSDIGKKRDAKKKPSSKHH EHSNGDWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	0	1
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	5.5	0.8951
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10012577 [exp]	6.0	0.8158
AT1G28260			Telomerase activating protein ...		Lus10015430 [exp]	6.3	0.8677
AT1G68490			unknown protein		Lus10038934 [exp]	7.7	0.8644
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Lus10011822 [exp]	8.4	0.7881
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	17.5	0.8561
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042260 [exp]	18.5	0.8152
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	18.6	0.8388
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	21.4	0.8538
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	22.0	0.8498

Compare expression of checked genes

Lus10017326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.