Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24110 125 / 8e-35 unknown protein AT1G75180 50 / 5e-07 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001676 [exp] 399 / 5e-142 AT4G24110 165 / 4e-50 unknown protein Lus10010803 [exp] 59 / 8e-10 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10016311 [exp] 59 / 9e-10 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10042323 [exp] 49 / 1e-06 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10007912 [exp] 44 / 9e-05 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082500 [exp] 145 / 1e-42 AT4G24110 135 / 1e-38 unknown protein Potri.003G147800 [exp] 133 / 1e-37 AT4G24110 108 / 2e-28 unknown protein Potri.002G163300 [exp] 46 / 1e-05 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017328 pacid=23140149 polypeptide=Lus10017328 locus=Lus10017328.g ID=Lus10017328.BGIv1.0 annot-version=v1.0 ATGTGTAGAACGACTGATTTCGATGGCTACGAGCCGATCAGCCGACTCAGGAACCCACTCAAGATCAAAGCTTTCTTCTGCCGCTTCTCCTGCTTCCACC GCCGCACATCGTTCCCGGACTCGTTAACTCTCTGTTTCCCGCCTCGGATTAACGGCACGGAGCTCCAGATCGACGGATCCAAGATCCGACCCGACTCCAA CGCATTCCTCGACCTCCATAAGCTCATCGACGTCAAGACCAAGCTTGGAGAGGCAATCTACGGCTCTAGAGAATCCGTACATGCGACAGGAGGGGTCAGC TTCGAGGTTTATCTAAAGGACGAGAGGGTTCTGGAAGGGATCTTTACGAAGGATGAGGAACACGGGTGGAATTTAGACTGCAGGTCGAAGGTTGAGAATG CTGCTGTCGGATCCGGTGTGGTGGATGTGTGTGTCCCGGTGGCGGATCAGATTGCGCCGCTGAGTGAGCGGGTGAAGCTTGTGGCGGCGGCGACGAAAGG GAGCTGCCGGCGGAAGGGTGGGGTTGAGAGGTTGGTGGTGATCCCGGAGGATGCGGAGAATGACGATGACGAGGGTGGTGGATCGGACGGTCGGTGTTGC TGCGATTGTGATGGTACTGATAGTGGATCGAACGATGAGGATTGGGAGGAGATAAGTGGGCCGGAAGAAGGAACGGAGGATTTGGAGGGAGTTGGGTGGG CCGTGGATGTTGGGCTTTGGGTAATGTGTTTGGGCGTGGGCTATTTGGTTTCCAAAGCCTCAACCAAACGCCTAAGACGCATGAGGATACTTTGA
AA sequence Show only first row Show all	>Lus10017328 pacid=23140149 polypeptide=Lus10017328 locus=Lus10017328.g ID=Lus10017328.BGIv1.0 annot-version=v1.0 MCRTTDFDGYEPISRLRNPLKIKAFFCRFSCFHRRTSFPDSLTLCFPPRINGTELQIDGSKIRPDSNAFLDLHKLIDVKTKLGEAIYGSRESVHATGGVS FEVYLKDERVLEGIFTKDEEHGWNLDCRSKVENAAVGSGVVDVCVPVADQIAPLSERVKLVAAATKGSCRRKGGVERLVVIPEDAENDDDEGGGSDGRCC CDCDGTDSGSNDEDWEEISGPEEGTEDLEGVGWAVDVGLWVMCLGVGYLVSKASTKRLRRMRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24110			unknown protein		Lus10017328 [exp]	0	1
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	1.4	0.9421
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	2.0	0.8824
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	3.0	0.8750
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10042916 [exp]	4.6	0.8571
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	6.0	0.8569
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	8.1	0.8474
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	8.2	0.8737
AT1G76600			unknown protein		Lus10036322 [exp]	8.5	0.8475
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	9.5	0.8581
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	9.7	0.8353

Compare expression of checked genes

Lus10017328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.