Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41950 621 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G27070 42 / 0.0004 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001675 [exp] 799 / 0 AT5G41950 676 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025650 [exp] 49 / 1e-05 AT5G41950 47 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018184 [exp] 46 / 0.0001 AT5G41950 47 / 4e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G146200 [exp] 677 / 0 AT5G41950 683 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G050600 [exp] 51 / 3e-06 AT5G41950 49 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06552 [flax] [poplar] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Lus10017329 pacid=23140185 polypeptide=Lus10017329 locus=Lus10017329.g ID=Lus10017329.BGIv1.0 annot-version=v1.0 ATGGGCCCAGTAGTGCTGGACCCAAACAATTTGAACTTACTGGACTTGCAGCTCGTCTGTCGGGAAATAAAGAAACTGAAACCATCTTTTCGTGCTTCTG AATTTTCCTTCCAAGCTCCACGAATTCCATTTCTCTGCAGATCTGTTTCTTCATCAGTTCGCATACTTTTCTCATCTTCTCTACACTGGTTTGTTCCGGT TTCCGTTTCTTTCACAATGTCGACGAATGCAGAAGAAGCCGAATTCCAGGATGTGGCCGAGGGTGCCTCACCCATGGCAGCATCAGGACGGATGACTACG GACCTACAAGAAGCTTCATCGGAGCCGTTGCCGGCACCGGAATCCGTGCTACAAAAAAATCCAGGATCTGGGTCACTAGCAGCACAAGTGTCCGAGCCCG TACCCGTACCCGAGCACGAAGCTGATCCAGAACCAGCTCCGCCAGCAGTGACCAATTCGGATCCCGTGGTTGAGGATGAACAGAAAGATGCTCCTCCGGT CGAGTCCACTGGAGGAGAGCCGGAGTCTCCATCTAATGACCAAGGAGCTCGCCCGACACAGCTGCGCAAGGACGATGGCAACCGGACGTTTACGATGAGG GAGCTGCTCACTGAGTTGAAAACCGAGGAAGGAGAAGATGCCAACTCTCCTTACAGTCAGTCGCTGGTTGTTCTTAATCCTAAGGATCTCGGTGACTGTT TAGCTGAATCAAATGTAGGATTAGTAACTACTCTTAGGCTGGAAAATGAGATAGGATCATCATTGTTGTTTGTCAATTCTATCGATTATGCGCTATTTGG TGCAGTCATTGGACTTATAGCAGTGAGATCTGTTCAAGAATCCCCACAACAACATGCAGCAGAACAGACCAATGCTGCCATGGAGTTGATCAATAGTATC ACTGGTGTGGATGAGGAAGGTCGATCTCGGCAAAGAATTCTAACTTTTGCTGCGAAGAGGTATGCCAGTGCAATTGAGAGAAATCCCGACGACTATGACG CCCTTTACAATTGGGCGTTGGTTCTTCAGGAAAGCGCAGACAATGTTAGCCCAGAATCAACCTCACCTTCAAAAGATGCTCTGCTTGAGGAAGCTTGTAA AAAATATGACGAGGCTACCCGACTTTGCCCTACACTGCATGATGCTTTCTATAATTGGGCTATAGCCATTTCTGATCGTGCCAAAATGCGTGGCCGAACA AAGGAGGCTGAAGAACTCTGGAAGCAGGCAACAAAAAACTATGAAAAAGCTGTGCAACTTAACTGGAACAGTCCACAGGCGCTTAACAATTGGGGACTGG CTCTACAGGAACTCAGTGCTATTGTTCCTGCTCGAGAAAAGCAAACAATTGTGAGGACAGCAATTAGTAAGTTCCGAGCTGCAATAAGATTGCAATTTGA CTTTCATCGAGCAATCTACAACCTTGGGACTGTTCTGTATGCATTAGCAGAGGACACATTGAGAGCTGGTACAGCAACCAATCCTAAGGATGTTTCCTCT AATGAGTTGTACAGCCAATCTGCTATATACATCGCTGCTGCTCATGCATTGAAGCCAAATTACTCCGTATACAGCAGTGCATTACGGCTTGTACGTTCAA TGTTACCACTGCCATATCTAAAAATTGGATATCTCACTGCACCGCCAGCCGGACAACCAATTGCGCCTCACAATGACTGGAAAAGAGCACAATTCGTTTT GAATCATGAAGGACTCCAGCAGTATGTCAAGCCCGATCCAAAGCAAGCACCGCAAGGCTTATCAAGGAGATCAGATGCAGGTAGCAACGACAAGAAGACC ATCAAAGTCGAAGTTGCGGATATTATTTCGGTATCAGCATGCGCAGATTTGACGTTGCCCCCTGGTGCCGCCCTTTGTATTGATACAGTTCAGGGACCGG TTTTCTTGGTAAGCATCATCGATTCTCCTCGTTTCCGGTTTTTGTGTGTAATACCGAAACGAAGGGTGATCATTGACACATTGTTTTCCCAGATTGCTGA CTCGTGGGAATACTTGGATGGATGGCTCGATGCGATTCGTCTCGTCTACACGATCTACGCACGAGGTAAGAGCGACGTCCTCGCTTCCATTGTAACCAGC TGA
AA sequence Show only first row Show all	>Lus10017329 pacid=23140185 polypeptide=Lus10017329 locus=Lus10017329.g ID=Lus10017329.BGIv1.0 annot-version=v1.0 MGPVVLDPNNLNLLDLQLVCREIKKLKPSFRASEFSFQAPRIPFLCRSVSSSVRILFSSSLHWFVPVSVSFTMSTNAEEAEFQDVAEGASPMAASGRMTT DLQEASSEPLPAPESVLQKNPGSGSLAAQVSEPVPVPEHEADPEPAPPAVTNSDPVVEDEQKDAPPVESTGGEPESPSNDQGARPTQLRKDDGNRTFTMR ELLTELKTEEGEDANSPYSQSLVVLNPKDLGDCLAESNVGLVTTLRLENEIGSSLLFVNSIDYALFGAVIGLIAVRSVQESPQQHAAEQTNAAMELINSI TGVDEEGRSRQRILTFAAKRYASAIERNPDDYDALYNWALVLQESADNVSPESTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRT KEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIRLQFDFHRAIYNLGTVLYALAEDTLRAGTATNPKDVSS NELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPYLKIGYLTAPPAGQPIAPHNDWKRAQFVLNHEGLQQYVKPDPKQAPQGLSRRSDAGSNDKKT IKVEVADIISVSACADLTLPPGAALCIDTVQGPVFLVSIIDSPRFRFLCVIPKRRVIIDTLFSQIADSWEYLDGWLDAIRLVYTIYARGKSDVLASIVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10017329 [exp]	0	1
AT4G23460			Adaptin family protein (.1)		Lus10032286 [exp]	1.0	0.9497
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	2.0	0.9381
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10024002 [exp]	2.0	0.9193
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	2.4	0.9305
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10015440 [exp]	3.2	0.9159
AT1G05520			Sec23/Sec24 protein transport ...		Lus10041256 [exp]	6.3	0.8953
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	7.7	0.9107
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	8.1	0.8895
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	9.4	0.8994
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	10.5	0.8926

Compare expression of checked genes

Lus10017329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.