Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) AT5G46230 132 / 3e-40 Protein of unknown function, DUF538 (.1) AT1G56580 124 / 2e-36 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT1G09310 118 / 4e-34 Protein of unknown function, DUF538 (.1) AT5G49600 95 / 4e-25 Protein of unknown function, DUF538 (.1) AT1G30020 94 / 9e-25 Protein of unknown function, DUF538 (.1) AT4G02370 49 / 1e-07 Protein of unknown function, DUF538 (.1) AT3G07470 48 / 2e-07 Protein of unknown function, DUF538 (.1) AT1G55265 48 / 4e-07 Protein of unknown function, DUF538 (.1) AT5G37070 45 / 5e-06 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001674 [exp] 289 / 9e-102 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 129 / 4e-38 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10039866 [exp] 128 / 8e-38 AT1G09310 196 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 119 / 2e-34 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 118 / 2e-34 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 113 / 9e-33 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 108 / 9e-31 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10037804 [exp] 107 / 1e-29 AT5G49600 144 / 2e-44 Protein of unknown function, DUF538 (.1) Lus10017087 [exp] 107 / 9e-29 AT5G49600 145 / 3e-43 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G146400 [exp] 226 / 6e-77 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 220 / 9e-75 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 136 / 2e-41 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 132 / 1e-39 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 126 / 7e-38 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 99 / 2e-26 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 93 / 7e-25 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 93 / 9e-25 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 86 / 3e-22 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 50 / 3e-08 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10017330 pacid=23140237 polypeptide=Lus10017330 locus=Lus10017330.g ID=Lus10017330.BGIv1.0 annot-version=v1.0 ATGGCAGCGAAAGGAGGAGGAAGCGGCAGAGTCGACGAAAGGGAAGGGGCGGAGATCGTGTACGGAGCAGAGCAATGCTACGCTCACTCAGTGAATCTTC TCCAGGAGCTGGGATTCCCCAAGGGTGTGCTCCCACTGAAGGACCTGGAGGAATGCGGGCGGGTTAAGGAAACAGGGTACGTGTGGATGAAGCTCAAGGC GCCTTACGACCATTTCTTCGAGTCGACGAATTCCAGAGTCAGCTACGCGGCGGAGGTGACCGGGTACGTGGAGAAGCTGAAGATGAAGAAGATGAGCGGG ATCAAGAGCAAGCAGATGTTCATGTGGGTACCCATTACGGAGATGAGTATGGAGCATGCTGGGAGTAAGAAGATTACTTTCAAGACTCCCGTGGGGATCG GCAAGTCTTTTCCGGTGTCGGCTTTTGAGACCGGAGATGAGGAGGAGCCACCGCAGCAGAGTTCTGACCAGGGAATGCTTGAATAA
AA sequence Show only first row Show all	>Lus10017330 pacid=23140237 polypeptide=Lus10017330 locus=Lus10017330.g ID=Lus10017330.BGIv1.0 annot-version=v1.0 MAAKGGGSGRVDEREGAEIVYGAEQCYAHSVNLLQELGFPKGVLPLKDLEECGRVKETGYVWMKLKAPYDHFFESTNSRVSYAAEVTGYVEKLKMKKMSG IKSKQMFMWVPITEMSMEHAGSKKITFKTPVGIGKSFPVSAFETGDEEEPPQQSSDQGMLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	1.0	0.9838
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	1.4	0.9831
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032554 [exp]	3.0	0.9779
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10017609 [exp]	3.2	0.9631
AT4G02830			unknown protein		Lus10042573 [exp]	3.5	0.9715
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10041196 [exp]	3.9	0.9675
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10007906 [exp]	4.2	0.9668
					Lus10034812 [exp]	4.6	0.9664
AT1G52155			unknown protein		Lus10038269 [exp]	5.1	0.9418
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10033473 [exp]	5.8	0.9519

Compare expression of checked genes

Lus10017330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.