Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08300 142 / 1e-40 Succinyl-CoA ligase, alpha subunit (.1) AT5G23250 130 / 9e-37 Succinyl-CoA ligase, alpha subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017337 [exp] 235 / 2e-79 AT5G08300 132 / 8e-38 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 219 / 2e-70 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10017389 [exp] 171 / 5e-52 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 162 / 1e-48 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10040992 [exp] 159 / 4e-47 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 92 / 8e-23 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10003877 [exp] 88 / 4e-21 AT5G23250 198 / 6e-63 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10006405 [exp] 44 / 4e-05 AT5G08300 80 / 2e-17 Succinyl-CoA ligase, alpha subunit (.1) Lus10010186 [exp] 0 / 1 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036200 [exp] 136 / 2e-38 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.005G091400 [exp] 135 / 4e-38 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 134 / 1e-37 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02629 [flax] [poplar] CoA_binding CoA binding domain
Representative CDS sequence Show only first row Show all	>Lus10017331 pacid=23140152 polypeptide=Lus10017331 locus=Lus10017331.g ID=Lus10017331.BGIv1.0 annot-version=v1.0 ATGGCTCGTCAAGCCACCAGACTCGTGGCCTCTTTGTCCTCCAAGCTTCGCGCTCCCACTCCCCAGCTCACCCCCCTCTTCCTCCTCGCAAACTTTATTG CAATCGCGCTCCTTCGCCTCTGCTCCGCCTCCCCCTCCGGCGGTGTTTGTCGACAAGAACACAAGCGTCTTTTGCCAGGGAATCACTGGAAAAAACGAGA CTTTCCACACACCAAACAAGCCATTGAATATGGCACCAAGATGGTTGGAGGGGTGACACCTAAAAAGGGTGGCACGGAACATTTGGGCCTTCCTGTCTTC AACTCCGTCGCTGAAGCAAAGTCTGAAACGAAAGCTAACGCATCTGTGATCTATGTTCCTCCACCTTTTGCCGCTGCTGCTATTATGGAGGCTCTGGAAG CTGAATTGGACCTAGTTGTTTGTATCACTGAAGGAATTCCTCAGCATGACATGGTCTTCCAAACAACAGCAGTTGGTCTTGGACAATCCACCTGCGTAGA GAAGTTCCTAGCAGACCCTCAGACTGAAGCTATCGTGTCAGGCGGAAAGGGTACTGCACAAGACAAGATCAGGACAGTGAAGGAAGCTGGGGTGACCGTA GTTGAATCTCCGGCGAAGATAGGTACCGCCATGTTCAGTGTGTTCAAGGAAAGGGGTCTGGTCAACTGA
AA sequence Show only first row Show all	>Lus10017331 pacid=23140152 polypeptide=Lus10017331 locus=Lus10017331.g ID=Lus10017331.BGIv1.0 annot-version=v1.0 MARQATRLVASLSSKLRAPTPQLTPLFLLANFIAIALLRLCSASPSGGVCRQEHKRLLPGNHWKKRDFPHTKQAIEYGTKMVGGVTPKKGGTEHLGLPVF NSVAEAKSETKANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMVFQTTAVGLGQSTCVEKFLADPQTEAIVSGGKGTAQDKIRTVKEAGVTV VESPAKIGTAMFSVFKERGLVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	0	1
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	8.2	0.8461
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	8.8	0.8498
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10034894 [exp]	10.2	0.8108
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	11.8	0.8274
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	13.0	0.8053
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10034116 [exp]	15.2	0.7963
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	17.4	0.8449
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	24.7	0.8273
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	27.2	0.8222
					Lus10036951 [exp]	27.9	0.7500

Compare expression of checked genes

Lus10017331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.