Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64660 660 / 0 ATMGL methionine gamma-lyase (.1) AT3G01120 164 / 6e-45 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 144 / 2e-38 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 123 / 9e-31 CBL cystathionine beta-lyase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000880 [exp] 667 / 0 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 645 / 0 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 612 / 0 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 398 / 9e-138 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10000074 [exp] 292 / 2e-98 AT1G64660 244 / 2e-80 methionine gamma-lyase (.1) Lus10001671 [exp] 273 / 8e-91 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1) Lus10030694 [exp] 161 / 1e-43 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 141 / 1e-36 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10027313 [exp] 121 / 9e-30 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084000 [exp] 717 / 0 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G187032 [exp] 282 / 1e-93 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1) Potri.003G146600 [exp] 267 / 6e-87 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.017G086500 [exp] 153 / 8e-41 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G038200 [exp] 119 / 3e-29 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10017333 pacid=23140164 polypeptide=Lus10017333 locus=Lus10017333.g ID=Lus10017333.BGIv1.0 annot-version=v1.0 ATGGCAACACAGCGAATTTTCCCAGCCGCCGCCGCCAAGAAGCGGGGACCGGAAGGTGAAAACGGAGGCGATGAGATTTTCCCGGCGGCGAAGAAAGCCA TGCTGTCATCTGGAGGAGGCTACTGGGAGGATCCTGCCGCCGCCCTGGCTACTGCCCGCCACGAGTTTGGCGAACATGGCGGCGTTAACATGTCGATCGA GGCCTCTGCCACGTTCACCGTCATGGAGCCGGAGACCATGCGCCGCATGTTCACCGGAGAGCTCGGCCCAGACCGAGATTTCTTTGTCTACAGCCGCCAT TTCAACCCCACCGTCCTCAACCTCGGCCGCCAGATGGCTGCCCTTGAAGGCACCGAGGCCGCTTATTGCACCGCCAGCGGAATGTCTGCGATAGCATCGG TGTTGCTGCAGCTGTGTAGCAGCGGGGGACACGTGGTGGCGTCGCACACGCTTTACGGTGGGACACACGCGCTGCTGACGCATTTCCTGCCGAGTGCATG CAACATAACGACCTCGTTCGTGGACATAGTGGATATGGAAGCCGTGAGGAGTGCGGTGGTTGAAGGGAAGACTAATGTTCTGTATTTCGAGTCGATGTCC AACCCAACACTCACGGTCGCGAACATACCGGAGCTCAGCCGGATTGCTCACGATAAGGGCGTGACGGTGGTGGTCGACAACACGTTCGCTCCGATGGTGC TGTCTCCGGCAAGACTAGGTGCTGACGTGGTCGTCCATAGCGTTTCCAAGTTCATCAGCGGGGGTGCTGACATCATTGCAGGAGCGGTGTGTGGGCCAGC AAGCCTAGTGAACTCAATGATGGACCTCCGCCAAGGAGCAATAATGCTACTTGGGCCGACAATGAACGCCAAAGTGGCCTTCGAGCTTTCAGAGAGAGTC CCTCACTTGGGCCTGAGGATGAAAGAGCACTCCAACAGAGCAATGGTGTACGCCGCTAGGATGAAGAAAATGGGCCTGAAAGTCATCTACCCGGGCCTGG AGGACCACCCGCAGCACCAGCTCCTCAAGTCCTTGGCCAACAAGGACTACGGCTTCGGCGGGATTCTGTCCCTCGACATGGTGACCGAGGACCGGGCCAA CCGGCTGATGAACCAGCTCCAGAACGCCACCCAGTTCGGGTTCATGGCCGTCAGCCTGGGCTACTACGAGACCCTCATGTCGTGCTCGGGGAGCAGCACC AGTAGCGAGATGAACGAGGAGGAGAAGCAAGTCGCGGGGATCTCGCCGGGGTTGATTAGGATGTCGATCGGGTATGTCGGGAATGTGGAGCAGAAGTGGA GCCAGTTCGAGCGGGCGGTTTCCAGACTGCCCAAGGAAAAAGATCGAGATTGA
AA sequence Show only first row Show all	>Lus10017333 pacid=23140164 polypeptide=Lus10017333 locus=Lus10017333.g ID=Lus10017333.BGIv1.0 annot-version=v1.0 MATQRIFPAAAAKKRGPEGENGGDEIFPAAKKAMLSSGGGYWEDPAAALATARHEFGEHGGVNMSIEASATFTVMEPETMRRMFTGELGPDRDFFVYSRH FNPTVLNLGRQMAALEGTEAAYCTASGMSAIASVLLQLCSSGGHVVASHTLYGGTHALLTHFLPSACNITTSFVDIVDMEAVRSAVVEGKTNVLYFESMS NPTLTVANIPELSRIAHDKGVTVVVDNTFAPMVLSPARLGADVVVHSVSKFISGGADIIAGAVCGPASLVNSMMDLRQGAIMLLGPTMNAKVAFELSERV PHLGLRMKEHSNRAMVYAARMKKMGLKVIYPGLEDHPQHQLLKSLANKDYGFGGILSLDMVTEDRANRLMNQLQNATQFGFMAVSLGYYETLMSCSGSST SSEMNEEEKQVAGISPGLIRMSIGYVGNVEQKWSQFERAVSRLPKEKDRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	3.2	0.9739
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	4.2	0.9649
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001103 [exp]	5.7	0.9712
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	7.3	0.9686
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	8.7	0.9654
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	11.8	0.9640
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	14.6	0.8972
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	20.6	0.9660
AT1G49860		ATGSTF14	glutathione S-transferase (cla...		Lus10036808 [exp]	23.1	0.9566
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	26.2	0.9518

Compare expression of checked genes

Lus10017333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.