Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61880 655 / 0 CYP78A9 cytochrome p450 78a9 (.1.2) AT2G46660 647 / 0 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT1G01190 640 / 0 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT1G74110 502 / 3e-174 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G13710 487 / 1e-168 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT5G09970 470 / 1e-161 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT5G07990 270 / 4e-84 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G40890 247 / 1e-75 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G31940 236 / 5e-71 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G37430 233 / 3e-70 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001670 [exp] 835 / 0 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10030216 [exp] 642 / 0 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10005995 [exp] 638 / 0 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10036627 [exp] 470 / 2e-161 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 464 / 3e-159 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 444 / 5e-151 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10015788 [exp] 431 / 2e-147 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10035502 [exp] 265 / 3e-82 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10013150 [exp] 264 / 1e-81 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083900 [exp] 714 / 0 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.014G102700 [exp] 702 / 0 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 701 / 0 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 686 / 0 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G173500 [exp] 495 / 8e-172 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.002G060900 [exp] 493 / 2e-170 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 486 / 5e-168 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.001G054800 [exp] 481 / 1e-165 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.005G084500 [exp] 479 / 3e-165 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 475 / 9e-164 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017334 pacid=23140258 polypeptide=Lus10017334 locus=Lus10017334.g ID=Lus10017334.BGIv1.0 annot-version=v1.0 ATGGAAACCACTACAGCTCAAATCCACGACTCCTTCTGGCCTCTACTCCTCGCCTCCAAACTCTCTTCCCATCACACCATTCCCATCGTCCTCTTCCTCG CAACCTTATGGCTCGTTCTCAACCTTTACCGCTGGACCAGCCCTGGTGGCCCCGCTTGGGGGAAGCTTCGATTATTCCGAAACATCCCCGGGCCGAGGGG TCTCCCTCTGGTAGGAAGCATGAATCTCATGACGAACTTGGCTCACCACAAGCTGTCCGCAGCCTCCAAACTACACCAAGCCGAGAAGCTCATGGCGTTC AGCGTCGGTGAGACACGTTTCGTCGTCGCCAGCCATCCTGACGTGGCTAAGGAGATCCTCAACAGCTCGGCCTTCGCTGACCGTCCGATCAAGGAGTCCG CCTACGGCCTCATGTTCAACCGCGCCATCGGGTTCGCCCCGTACGGTGCGTATTGGAGGACCCTGAGGAGGATTGCTGCCAATCATATGTTCGGTCCTAA GCAAATCACCTCCTCCGCTCCCCAAAGGCTCAGTATTGCTTCGCAAATGACGTCACTCATTCGAAATAATAATATGAAGTTTCAAGTTCGAGATACACTA AAGGCGGCTTCACTCAACAACATGATGTCATCAGTCTTCGGCCGTGAGTATCGACTCGATCGCTCCAACTCCGAAACCGAACTGCTTCGCGAGCTTGTTG AGGAAGGATACGATTTGTTAGGGAAGCTTAACTTGTCCGACCATCTTCCTTGGCTTGCTAGCCTTGACCTTCAGATGATCCGATTCAGATGTTCAAACCT CGTCACTAAAGTTAACCGGTTCGTTAACCGGATCATCGAGGAGCATCGAAACACAACCGGTTCGCGAACTACACATGATTTCGTCGATGTTCTTCTTTCT CTCGACAATCCTGATAAATTGTCCGATGATGACATGATCGCCATACTTTGGGAAATGATATTTAGGGGAACGGACACGGTGGCGGTTTTGATTGAGTGGA TACTGGCGAGAATGGTTCTGCACCCTGAAATCCAATCGACGGTGCAGGAAGAGCTGGATCGAGTGGTCGGGAAATCTCGGCCGTTGATGGAATCCGACAT TCCGTCCATGGTTTACCTCCCAGCGCTGGTGAAAGAAGGCCTCAGGCTGCACCCACCTGGCCCACTCCTGTCGTGGGCTCGCTTGGCGACTAGTGACACC ACGATTAACGGCCACCACATACCCGCCGGGACCACGGCGATGGTTAATATGTGGGCCATCACCCGGGACCCGCAGTTTTGGGCCCAGCCTTTAAAGTTCA GCCCAGACAGGTTTATATCCGGCGATGGTGGAATGGAGTTTGCCGCCGGCGAGTTTTCTGTCATGGGGAGCGACCTGAGGCTTGCTCCGTTCGGGTCGGG TAGGAGGACATGTCCGGGGAAGGCGCTGGGTTTCTCCACGGTGGTGTTTTGGGTGGGGACGTTGTTGCATGAGTTTGAATGGTTCAATGGTTCCGATGAG CCGGTTGATCTGTCCGAGAAGTTGAAGCTGTCGTGTGAGATGATGAATCCTCTGACGGTGAAGGTGCAACCCAGGAGATCTGTAATATGA
AA sequence Show only first row Show all	>Lus10017334 pacid=23140258 polypeptide=Lus10017334 locus=Lus10017334.g ID=Lus10017334.BGIv1.0 annot-version=v1.0 METTTAQIHDSFWPLLLASKLSSHHTIPIVLFLATLWLVLNLYRWTSPGGPAWGKLRLFRNIPGPRGLPLVGSMNLMTNLAHHKLSAASKLHQAEKLMAF SVGETRFVVASHPDVAKEILNSSAFADRPIKESAYGLMFNRAIGFAPYGAYWRTLRRIAANHMFGPKQITSSAPQRLSIASQMTSLIRNNNMKFQVRDTL KAASLNNMMSSVFGREYRLDRSNSETELLRELVEEGYDLLGKLNLSDHLPWLASLDLQMIRFRCSNLVTKVNRFVNRIIEEHRNTTGSRTTHDFVDVLLS LDNPDKLSDDDMIAILWEMIFRGTDTVAVLIEWILARMVLHPEIQSTVQEELDRVVGKSRPLMESDIPSMVYLPALVKEGLRLHPPGPLLSWARLATSDT TINGHHIPAGTTAMVNMWAITRDPQFWAQPLKFSPDRFISGDGGMEFAAGEFSVMGSDLRLAPFGSGRRTCPGKALGFSTVVFWVGTLLHEFEWFNGSDE PVDLSEKLKLSCEMMNPLTVKVQPRRSVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	0	1
AT4G13540			unknown protein		Lus10004393 [exp]	1.0	0.8397
AT1G53035			unknown protein		Lus10018600 [exp]	5.3	0.7582
AT2G35760			Uncharacterised protein family...		Lus10039060 [exp]	6.9	0.7751
AT5G40500			unknown protein		Lus10022273 [exp]	9.2	0.7985
AT5G63650		SNRK2-5, SNRK2....	SNF1-RELATED PROTEIN KINASE 2H...		Lus10004291 [exp]	13.2	0.6541
AT4G30410			sequence-specific DNA binding ...		Lus10015500 [exp]	13.5	0.7250
AT4G13540			unknown protein		Lus10023697 [exp]	13.9	0.7423
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	15.7	0.7461
AT5G25170			PPPDE putative thiol peptidase...		Lus10005341 [exp]	17.7	0.7329
AT5G17510			unknown protein		Lus10024979 [exp]	19.0	0.7187

Compare expression of checked genes

Lus10017334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.