Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46700 345 / 3e-120 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT2G19580 256 / 1e-85 TET2 tetraspanin2 (.1) AT3G45600 205 / 4e-65 TET3 tetraspanin3 (.1) AT4G30430 200 / 2e-63 TET9 tetraspanin9 (.1) AT2G23810 199 / 5e-63 TET8 tetraspanin8 (.1) AT4G28050 196 / 8e-62 TET7 tetraspanin7 (.1) AT5G60220 177 / 1e-53 TET4 tetraspanin4 (.1) AT3G12090 173 / 7e-53 TET6 tetraspanin6 (.1) AT1G63260 165 / 8e-50 TET10 tetraspanin10 (.1.2.3) AT1G18520 159 / 2e-47 TET11 tetraspanin11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001668 [exp] 458 / 5e-165 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10008563 [exp] 271 / 2e-91 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10023216 [exp] 211 / 1e-67 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10007998 [exp] 210 / 2e-67 AT2G19580 369 / 6e-130 tetraspanin2 (.1) Lus10038473 [exp] 210 / 3e-67 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10008891 [exp] 205 / 2e-65 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 204 / 7e-65 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10040551 [exp] 201 / 7e-64 AT2G19580 364 / 3e-128 tetraspanin2 (.1) Lus10015494 [exp] 196 / 5e-62 AT2G23810 370 / 2e-130 tetraspanin8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093000 [exp] 405 / 3e-144 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G141400 [exp] 403 / 1e-143 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 274 / 1e-92 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.009G015100 [exp] 224 / 7e-73 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.006G177900 [exp] 206 / 7e-66 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.018G099800 [exp] 200 / 2e-63 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.010G220300 [exp] 187 / 3e-58 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.008G041600 [exp] 185 / 2e-57 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.001G107200 [exp] 165 / 6e-50 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3) Potri.015G055700 [exp] 164 / 2e-49 AT1G18520 196 / 6e-62 tetraspanin11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10017336 pacid=23140223 polypeptide=Lus10017336 locus=Lus10017336.g ID=Lus10017336.BGIv1.0 annot-version=v1.0 ATGGCTCTCAGCAACAATGTGATAGGAGCCATAAACTTCGTGGCAATGCTGCTCTCTATCCCGATCATTGGCGCAGGAATCTGGCTCGCCATGGAGCCAG ACAACTCCTGCGTCAAGCTCCTCCAGTGGCCCATTATCATTCTAGGAATCTTCGTCCTCGTCGTGTCCATCGCAGGCTTCATCGGGGCCTTCTGGCGGAT CCCATGGCTGCTCATTTCCTACCTCGTCGCAATGCTGGTACTCATAATCCTCCTAGCCGTCTTGGTCGTGTTCGTGTTTATGGTGACCGACAAGGGTTCC GGTCACCCTGTTCCCAGTAGGGCCTACTTGGAGTACAGTCTCGACGACTTTTCCGGGTTCCTGCGGCGGAGGGTGAGGGGGCCGTTGAAGTGGGACCGGA TCAGAGGGTGCCTTAGCGGGACGAACATGTGTGCAGAGCTTAACCAGAGCTACCGGATGGCTCAGGACTTCTTCAATGCCCCCACTACTCCTTTGCAGTC GGGATGCTGCAAGCCACCAACAGAGTGCGGCTACACGTTCGTGAACCCGACGTACTGGATAAGTCCGATAAACAACGCGGCGGACATGGACTGCCTGCAG TGGAGCAACGACCAGACCCAGCTCTGCTACGGCTGTGACTCGTGCAAGGCCGGACTTCTGGCCAATCTCAAGGCCGAGTGGAGGAAAGCCGACATCATCC TCGTCATCACTCTGATCGCCCTGATTGTCGTCTATGTCGTCGGATGCTGTGCGTTTAGGAATGCCAAGACTGAAGACCTCTTCCGCAAGTACAAGCAAGG CTACACCTGA
AA sequence Show only first row Show all	>Lus10017336 pacid=23140223 polypeptide=Lus10017336 locus=Lus10017336.g ID=Lus10017336.BGIv1.0 annot-version=v1.0 MALSNNVIGAINFVAMLLSIPIIGAGIWLAMEPDNSCVKLLQWPIIILGIFVLVVSIAGFIGAFWRIPWLLISYLVAMLVLIILLAVLVVFVFMVTDKGS GHPVPSRAYLEYSLDDFSGFLRRRVRGPLKWDRIRGCLSGTNMCAELNQSYRMAQDFFNAPTTPLQSGCCKPPTECGYTFVNPTYWISPINNAADMDCLQ WSNDQTQLCYGCDSCKAGLLANLKAEWRKADIILVITLIALIVVYVVGCCAFRNAKTEDLFRKYKQGYT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10017336 [exp]	0	1
AT3G17350			unknown protein		Lus10043098 [exp]	1.0	0.8799
AT2G32280			Protein of unknown function (D...		Lus10039706 [exp]	5.8	0.7323
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	9.5	0.8326
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10035600 [exp]	9.9	0.8004
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	12.0	0.8263
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017138 [exp]	13.9	0.8011
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	13.9	0.8241
					Lus10029272 [exp]	14.5	0.8077
					Lus10010435 [exp]	15.0	0.8131
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10017535 [exp]	15.5	0.7713

Compare expression of checked genes

Lus10017336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.