Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23250 112 / 3e-30 Succinyl-CoA ligase, alpha subunit (.1.2) AT5G08300 110 / 1e-29 Succinyl-CoA ligase, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017331 [exp] 234 / 3e-79 AT5G08300 171 / 5e-52 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 207 / 7e-67 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10017389 [exp] 132 / 1e-37 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10040992 [exp] 130 / 5e-37 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 130 / 5e-37 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 113 / 1e-31 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10003877 [exp] 67 / 7e-14 AT5G23250 198 / 6e-63 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10010186 [exp] 45 / 8e-07 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091400 [exp] 122 / 4e-34 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.012G036200 [exp] 109 / 3e-29 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 108 / 1e-28 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02629 [flax] [poplar] CoA_binding CoA binding domain
Representative CDS sequence Show only first row Show all	>Lus10017337 pacid=23140153 polypeptide=Lus10017337 locus=Lus10017337.g ID=Lus10017337.BGIv1.0 annot-version=v1.0 ATGTCGTTTCTGAAAGAGGTTGGTGGAGTAGCACCTAAGAAGGGTGGCACAGAACACTTGGGCCTTCCTGCGTTTAACTCCGTCGCTGAAGCAAAGTCTG AAACGAAAGCTAACGCATCTGTGATCTATGTTCCTCCACCTTTTGCCGCTGCTGCTATTATGGAGGCTCTGGAAGCTGAATTGGACCTAGTTGTTTGTAT CACTGAAGGAATTCCTCAGCATGACATGGTCTTCCAAACAACAGCAGTTGGTCTTGGACAATCCACCTGCGTAGAGAAGTTCCTAGCAGACCCTCAGACT GAAAGCATCGTTCTTATCGGCCAGATCGGAGGTACTGGCAGAAGAGGATGCCGTTGCTCTAATAAAGCTATCGTGTCAGGCGGAAAGGGTACTGCACAAG ACAAGATCAGGACACTGAAGGAAGCTGGGGTGACCGTAGTTGAATCTCCGGCGAAGATAGGTACCGCCATGTTCAGTGTGTTCAAGGAAAGGGGTCTGGT CAACTGA
AA sequence Show only first row Show all	>Lus10017337 pacid=23140153 polypeptide=Lus10017337 locus=Lus10017337.g ID=Lus10017337.BGIv1.0 annot-version=v1.0 MSFLKEVGGVAPKKGGTEHLGLPAFNSVAEAKSETKANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMVFQTTAVGLGQSTCVEKFLADPQT ESIVLIGQIGGTGRRGCRCSNKAIVSGGKGTAQDKIRTLKEAGVTVVESPAKIGTAMFSVFKERGLVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017337 [exp]	0	1
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	15.9	0.8762
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	19.5	0.8890
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	22.1	0.8880
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	26.1	0.8858
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	33.0	0.8863
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017980 [exp]	35.7	0.8856
AT1G80170			Pectin lyase-like superfamily ...		Lus10026798 [exp]	35.9	0.8799
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	35.9	0.8422
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017486 [exp]	36.2	0.8808
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	43.1	0.8783

Compare expression of checked genes

Lus10017337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.