Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02800 387 / 5e-129 ATCEL2 cellulase 2 (.1) AT4G02290 384 / 5e-128 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G71380 353 / 2e-116 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 353 / 3e-116 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G64680 342 / 3e-115 unknown protein AT1G23210 335 / 4e-109 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G70710 334 / 7e-109 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT4G39010 334 / 1e-108 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 295 / 1e-93 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G64390 276 / 4e-85 ATGH9C2 glycosyl hydrolase 9C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001666 [exp] 496 / 1e-171 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10008208 [exp] 381 / 7e-127 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10001667 [exp] 357 / 9e-122 AT1G64680 339 / 1e-119 unknown protein Lus10038223 [exp] 366 / 4e-121 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10013418 [exp] 360 / 2e-119 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10010307 [exp] 348 / 7e-114 AT4G02290 493 / 2e-171 glycosyl hydrolase 9B13 (.1) Lus10002930 [exp] 341 / 2e-111 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10029071 [exp] 335 / 6e-109 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10018077 [exp] 332 / 1e-107 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083200 [exp] 496 / 4e-172 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.002G202400 [exp] 391 / 1e-130 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 383 / 1e-127 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.019G069300 [exp] 361 / 3e-119 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.001G083300 [exp] 350 / 3e-118 AT1G64680 383 / 8e-136 unknown protein Potri.009G123900 [exp] 344 / 1e-112 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.010G109200 [exp] 339 / 1e-110 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.004G162200 [exp] 337 / 8e-110 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.008G132700 [exp] 334 / 1e-108 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.015G127900 [exp] 316 / 1e-101 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10017338 pacid=23140217 polypeptide=Lus10017338 locus=Lus10017338.g ID=Lus10017338.BGIv1.0 annot-version=v1.0 ATGGTGGTCCTAATCAGCAGCAACCTTCAAGCTGCTCACTTCAATCTGAATCCCAATCTGAGACCCAGACGGAGCACAATAAGGTGCGGAATTGCGGAGC CGTCGGGTGAGCCGGCGCCTGTGGGGCAGAAAACCAAGTACAATGACGGCTTCTTCGAGAAGGCGTTCATGACTCTGTTCGCTCGGAAGATGGAGAATTT CGCATCCCCCGCCGCGAAAGCATCGAGAAACGGCGCCGTTTCGTCGAAAGGGTGGTTGGATTACAACTACGACAGCTTCGTGGACGCGTCGAAGAAAGTG ATGCAAGGGAGGAACAGATTGCAGCAGCAGCAGGTGGTTCGTGAGGTTCTACTCTCCATGCTTCCTCCTGGCGCGCCTGACCAGTTCAGAAAATTGTTTC CTCCGACGAGGTGGGCTGCGGAGTTCAATGCTGCTCTCACTGTGCCTTTCTTCCAATGGCTAGTTGGACCTTCAGAGGTTATAGAGGTGGAGATAAATGG AGTGAAGCAGAGAAGTGGAGTTCGTATAAAGAAGTGCAGGTACCTTGAGAACAGTGGATGTGTAGGAATGTGTGTGAACATGTGCAAGATCCCCACCCAA GATTTCTTTACTAATGAATTTGGCCTCCCTCTAACCATGAACCCAAACTTCGAAGATATGAGCTGCGAAATGATATACGGACAAGCTCCACCGTCGTTCG AGGAAGATCCAGTAGCCAAACAGCCTTGCTTTCCTAATATATGCATTCAGCCCCGAGGATTACTCCGACGCCTCGAAAAATCCATTCTGTTTTTCAAGGG GCAGAGGTCGGGAAGGCTGCCCTCCGACCAACGGCTTACGTGGAGGGGAGACTCTGGACTGTCGGACGGGTTTGCTTACCACGTTGACCTCGTGGGAGGA TACTACGATGCAGGCGACAATGTGAAATTCGGACTCCCCATGGCATTCACCACCACATTGCTTTCCTGGAGTGTGATTGAGTTCGGTAGCTCGATGGGGG ACGAGATCGAGAATGCCAAGTCCGCCATTCGTTGGAGCGCTGACTACCTTCTCAAGGCCGCCACTGCAACGCCTGACACCCTTTATGTTCAGCCGAACAT GGACCACAGATGCTGGGAGAGGCCCGAGGACATGGACACTCCGCGAACTGTCTACAGAGTCGAACCTCAAAACCCGGGTTCGGATGTAGCAGCCGAGACG GCTGCTGCTCTTGCAGCAGCATCACTTGTGTTTAAGGAATCCGACCCTCGTTATTCCTCCAAACTGCTTGGAACATCCGTCAAAGTATTTAGCTTTGCAG ACATGTACAGAGGATCTTACAGTGACTTTCTGGGTTCAGTCGTCTGCCCATTTTACTGCTCTTACTCAGGATATCATGATGAGCTCTTATGGGGAGCATC ATGGCTCCACAAAGCATCACAGAATGTGACCTACTTGAGCTATATCCAATCAAACGGTCACACTCTAGGAGCCGAGGATGACGATTTCTCCTTCAGTTGG GACGACAAGCGCCCTGGAACCAAAGTCCTCCTATCTAAGGAACTTCCAACTTTCCAAGCACAATACACTCCCGGTGGACTTCTATACAAAGGAACCGAGA GTAATCTACAGAACGTAACATCAACAACATTCTTACTACTAACATACGCCAAGTACCTGAACTCAACCGGCGGCGGCTAG
AA sequence Show only first row Show all	>Lus10017338 pacid=23140217 polypeptide=Lus10017338 locus=Lus10017338.g ID=Lus10017338.BGIv1.0 annot-version=v1.0 MVVLISSNLQAAHFNLNPNLRPRRSTIRCGIAEPSGEPAPVGQKTKYNDGFFEKAFMTLFARKMENFASPAAKASRNGAVSSKGWLDYNYDSFVDASKKV MQGRNRLQQQQVVREVLLSMLPPGAPDQFRKLFPPTRWAAEFNAALTVPFFQWLVGPSEVIEVEINGVKQRSGVRIKKCRYLENSGCVGMCVNMCKIPTQ DFFTNEFGLPLTMNPNFEDMSCEMIYGQAPPSFEEDPVAKQPCFPNICIQPRGLLRRLEKSILFFKGQRSGRLPSDQRLTWRGDSGLSDGFAYHVDLVGG YYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMGDEIENAKSAIRWSADYLLKAATATPDTLYVQPNMDHRCWERPEDMDTPRTVYRVEPQNPGSDVAAET AAALAAASLVFKESDPRYSSKLLGTSVKVFSFADMYRGSYSDFLGSVVCPFYCSYSGYHDELLWGASWLHKASQNVTYLSYIQSNGHTLGAEDDDFSFSW DDKRPGTKVLLSKELPTFQAQYTPGGLLYKGTESNLQNVTSTTFLLLTYAKYLNSTGGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	0	1
AT4G02920			unknown protein		Lus10029640 [exp]	1.0	0.9698
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	2.8	0.9688
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	3.5	0.9599
AT1G64680			unknown protein		Lus10001667 [exp]	3.5	0.9579
AT5G52420			unknown protein		Lus10039248 [exp]	4.9	0.9467
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	5.0	0.9562
AT1G28140			unknown protein		Lus10034291 [exp]	5.7	0.9376
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	5.7	0.9309
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	6.5	0.9489
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	6.9	0.9490

Compare expression of checked genes

Lus10017338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.