Plant FIBer expression Database

Lus10017339 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64690 74 / 8e-16 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
AT3G20350 43 / 8e-05 unknown protein
AT3G11590 41 / 0.0003 unknown protein
AT1G50660 40 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001665
[exp]
288 / 2e-99 AT1G64690 109 / 9e-29 BRANCHLESS TRICHOMES, branchless trichome (.1)
Lus10005316
[exp]
108 / 1e-30 AT1G64690 45 / 8e-07 BRANCHLESS TRICHOMES, branchless trichome (.1)
Lus10043111
[exp]
53 / 7e-08 AT1G50660 616 / 0.0 unknown protein
Lus10032637
[exp]
50 / 5e-07 AT1G50660 625 / 0.0 unknown protein
Lus10021521
[exp]
40 / 0.0007 AT1G50660 750 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G082600
[exp]
149 / 1e-43 AT1G64690 79 / 1e-16 BRANCHLESS TRICHOMES, branchless trichome (.1)
Potri.003G147900
[exp]
143 / 4e-42 AT1G64690 66 / 2e-12 BRANCHLESS TRICHOMES, branchless trichome (.1)
Potri.011G090100
[exp]
45 / 1e-05 AT1G50660 689 / 0.0 unknown protein
Potri.006G207800
[exp]
40 / 0.0006 AT3G11590 582 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10017339 pacid=23140157 polypeptide=Lus10017339 locus=Lus10017339.g ID=Lus10017339.BGIv1.0 annot-version=v1.0
ATGGAAGAGAATCGGATCAAGGAACTGAAGGCCGAGCTGGATCACGAGCGGAGATCGAGGAAGAAGGTGGAGATTCTGAACAAGAAGCTTGCCAGAGAGC
TGGCGGAGGAGAGGAGAGGGCGGGAGGCGCTGGTGAAAGTGTGCGAGAATCTCGCTAGGAAAATCGCGGCGGATAAATCTCAGATCGATTCCATGGAGAA
GGAAATGGAAGAAGAGAGGAAGATGCTGAGGATGGCGGAGGCTTTAAGAGAAGAGAGAGTCCAGATGAAGCTCTCCGATGCCAGAATGCTCTGGGAAGAG
AAGATGTCGTCGGAAGGGATGAAATTGGGGGAATCTGCTCCGGCGGCGATTGAGCGGAATTGGGAATCAGGGTTGGCGGCGGAGGAGACGACCGATTTGT
TGCCGGGGGAGTTTAGGAAACTAAACCTCGTCGTCGGCTGCGGCGGCGGCGGAGGAGGAATTGGGTTAGTTGAGAATCATCACATAAGGCGAGGGATCAG
AGGGTTTGTTGAGTTTCCGAGGATGGTTCATCGGATTGGATCGAGGAGCGGCGGCAAGCATTGGGGGACGAAGCTGGAGTGTCAGAAGGCTCAGCTGAGG
ATTCTGCTGAAACAGAGGAGTCCGATCCGATCCAATACTTTCATTATTAGTTGA
AA sequence
>Lus10017339 pacid=23140157 polypeptide=Lus10017339 locus=Lus10017339.g ID=Lus10017339.BGIv1.0 annot-version=v1.0
MEENRIKELKAELDHERRSRKKVEILNKKLARELAEERRGREALVKVCENLARKIAADKSQIDSMEKEMEEERKMLRMAEALREERVQMKLSDARMLWEE
KMSSEGMKLGESAPAAIERNWESGLAAEETTDLLPGEFRKLNLVVGCGGGGGGIGLVENHHIRRGIRGFVEFPRMVHRIGSRSGGKHWGTKLECQKAQLR
ILLKQRSPIRSNTFIIS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64690 BLT BRANCHLESS TRICHOMES, branchle... Lus10017339
[exp]
0 1
AT2G16850 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROT... Lus10014978
[exp]
1.0 0.8791
AT1G04360 RING/U-box superfamily protein... Lus10024881
[exp]
2.4 0.8140
AT2G30520 RPT2 ROOT PHOTOTROPISM 2, Phototrop... Lus10029102
[exp]
4.7 0.7770
AT4G12420 SKU5 Cupredoxin superfamily protein... Lus10004339
[exp]
5.7 0.7879
AT2G45960 PIP1;2, ATHH2, ... TRANSMEMBRANE PROTEIN A, NAMED... Lus10035483
[exp]
6.0 0.8005
AT1G30700 FAD-binding Berberine family p... Lus10038439
[exp]
6.3 0.7947
AT5G28150 Plant protein of unknown funct... Lus10042600
[exp]
6.9 0.7770
AT1G04360 RING/U-box superfamily protein... Lus10000710
[exp]
7.7 0.7776
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Lus10007748
[exp]
8.1 0.7944
AT3G08030 Protein of unknown function, D... Lus10029501
[exp]
10.2 0.8082

Lus10017339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.