Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32810 312 / 9e-90 RING/FYVE/PHD zinc finger superfamily protein (.2) AT4G10600 214 / 4e-63 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G33420 59 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 56 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 55 / 3e-07 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 49 / 3e-05 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001662 [exp] 1692 / 0 AT1G32810 261 / 3e-72 RING/FYVE/PHD zinc finger superfamily protein (.2) Lus10013775 [exp] 65 / 3e-10 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10039160 [exp] 65 / 3e-10 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 51 / 5e-06 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 50 / 9e-06 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 50 / 1e-05 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 50 / 2e-05 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152600 [exp] 742 / 0 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.001G448900 [exp] 724 / 0 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 63 / 1e-09 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 62 / 3e-09 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 61 / 5e-09 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 61 / 6e-09 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 59 / 1e-08 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 54 / 5e-07 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 53 / 1e-06 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017342 pacid=23140221 polypeptide=Lus10017342 locus=Lus10017342.g ID=Lus10017342.BGIv1.0 annot-version=v1.0 ATGAAGGGGCGCTCTCACCGTCTGCAGAGCCATGAAAACCACCACGAGGACTGGGTGGACGGCTCTTGGACGGTTGATTGCATTTGTGGTGTTAATTTCG ATGATGGGGAAGAGATGGTCAATTGCGATGAATGTGGCGTTTGGGTGCACACTCGTTGCTCTCGGTATGTCAAGGGAGATGACTTGTTCGCTTGTGATAA GTGCAAGGCGAAGAACAATCGTTACAGAGACAATGCAGAGACCGAGGTTGCTCAGTTGTTGGTTGAGCTGCCCACTAAGACCATCCGGCTGGAGAGTAGT TGTGCTAACGGCGCACCGCCTCGCCGTGCAGTTAGGCTGTGGACTGACATGCCATTAGAGGAGAAGGTGCATGTGCAGGGCATTCCTGGTGGTGACCCAG CTTTGTTCCGTGGCCTATCGTCTGTTTTCACACCAGAGTTATGGAAGTGCACAGGGTATGTTCCAAAGAAGTTCAATTTCCAGTACAGGGAGTTCCCATG TTGGGACAAGGATTCTGATGTTAATAATGAGGATGATAATGAGAATAATGTTGATAAGGGGGCTGGTGTTCTGTTCTCTTTGTCAAAGGAAAGCATGTTT GCTGTTCCAAGAGAAGAGAAGATTGATCGTCAGAAAAGTGTGCTCCTCAAAGAGACCAAGAAGCGTGATCTTCGATCTGGTGAAGTCGGGGGTTCCCATG TTGGACTTAAGAAAAAGAGAAGTTTGCTTCAGCCAGTCCTAATTCATTCAGGAAAGAGGAAGAAAGAAGATCCTTCGATGTTCAAAGATCAAAGTGGAAA GAAGAAAGCTAGGGTTTCAGACAAGGAGGTGGACTCAAAGAAGCGAGGTCATCAAACTTCAAGGACAGCATTTCCATCCACCAGCAGTGATGCAAAAACC TCTAAATTGCATGAAGGCAGAGATCCACCGTGTCGTAAGGATGTTGGTCAGGACACTAAGAACTCATATAAAAAAGAACAAGTATCTCAGCAATGTGAAT CGGATAATCATGTCGCACGGTGCAATATTGTTGAGGATTCCAAGAGTGATACTCTGTTGATTGATCACTCCATGGACACTCCTACCACCGTGAAAGATAA TTTGGCAATGGAAGCAATTCTCAAGGAAAGAAGGACTAGTCATGGAATTTCATCATCTCCGACTAGTTCGCTAAAAATTGATGATGTGTTGTCCATGGAA CGTGGTGAAGTTGGGAGAAACCAAATGCCTGTTAAACAAGAGGAAGATACCGAGATGAACAGTTCCCCTGCTGGAACTGAGAAGAAGGATCTAGTCGAAA AGGTTGATAGTGCTAACGTAGAGATTAATGATAGCTACATCCGCACTACCATTGTCTTGGGAGTTCCTTCTGATAGTCGTTTTTGGGTGATGAAGTCCCC TCCGGCTTCTGGCGGGACAAAAGATGCAGTTAGATCTTCGGACAATGACTCTGAAAACATTAAGATCAATGATGTGGTACCAGCTGTATCTCCGCAGGAT AAGAATGTTGAAGAAGTTGAGAGAACTTTAGATGCAGAAGCAGTCAGCAAATGTGACAAGGAAATGGCTGTTGAGAGTAAATGTCCTGCAGAAGAAGTGA GTCAGCTATCTGGTGATCATTCTAAGATTACAAAAGGAGAATCTGGGGGTTCAGGCGATGCAGTCCCTGTAAAGAAGTGTAATTCAGAAGTTAATCAAGA TTTCGACTCAGCTGAAGGGCAGCTCAAATCCAGCAAAATTATTTTAAGCTCCCCTGCATTATCTAGTCAGCAAAAAATAGCTGCGACCGTGGGGAAGTCA TTATCCAATTCATCCACTAACACTATCCCAAAGTCAGCTGCTCCAGATCACTTTACATCCACTGATGAGAAGAAGGCTATAGCGGATACTAAGAACCCTA TCATTTCCGATACCCTGGACAAAAAGGACCAAACTGCAAATGACATTGTCAGTGACAGGGACGTCGACAGGCGTAGCCCATCCAGGGGCAGGTCAAGAGA TCATCCAAGGAGTTCTCTAAACTCTAGTTCAAAGTTCTCCAGCACAAGCAAGAGTTTGCATACCTCCACCTCTAGGAGAGCAGCGTCCAATTCAAAAGAT TTCACTACTCAGTCGTCTTCTAAAGTATCTTTGACAAAGAATCCTTGTGCGGCTGCTGGTTCACTGCAAAGTGAGCGTTGCTCAAACTCCCAAAACAGAA CACCAGGTTCAGGCTTACCGAGGAGTGAGAAATTGAATCATTCTATTAGTCAGTCTGCTTCTAAACCAACCCATTCATCGTCCAGTAATCTTACTCCTCC GACCACTTCTATTTCGACACTCAGTGATGAAGAGCTGGCTTTGCTTTTGCATCAAGAACTCAATAGTTCACCTAGAGTGCCTCGTGTTCCTCGTGTTCGG CAAGGCACACAGTTAACTTCTCCAACTGCAGCTAGCTTACTTATGAAGCGCAGCACATCGAGCTCCGGAGCAAAAGATTTTAGTTCGTTTTCTAGGAGAA AAGCTAAAGATGTGTCCAAAGATGGTCATTCCCGTGCCCATCGGCTAGATGATGAACCTAGAAGGGCAGAAAGGCATCATTCTTCTCCTGATCGGAGGAG ACAAGATCCCGAGTCAAAGAGAGACGAGGGTGGATCTTCCATGCGAGCTCAGAGAGTGAAGAAGAACACAGCTCCAGTCTCCAATTCAACTGCCAACAGT GGTCGTTCTTCCTCTACTGACGGTAATGATCACCATGTATCGTCACTAAGAAAGTCTCCTCAGAGCATCTCTGATGAGGAAACTGGACCTGCTAACGGTT CTGTCCGTCGTACTTTACCAGGCCTAATCAATGAGATCATGAGCAAAGGCAAGCGCATGACATATGAGGAACTCTGTAATGCGGTTTTACCGCATTGGCC CAGCTTGAGGAAGCATAACGGTGAACGCTATGCATATTCCAGTCATTCCCAGGCTGTTCTAGATTGCCTCAGAAATAGACATGAATGGGCTCGGTTGGTC GATCGGGGTCCCAAGACAAGTTCAAGCAGGAAAAGGCGGAAGACCGATGCCGAAGAATCAGAAGACAACGAGGTTGGGAAAGGGAGAAGTAGAAGGGAGA GAGAAGGGAAGAGCGATGTAGAGGCAGATAGAGAAGAGTTCACGAAAGGGAAGCGGAATGCTAGGAAAAGGAGGCGTCTGGCCCTGCAAGGTAGAGGAGT AAAAGATGCGAGGAAGCCACCAAAGGGAGATCATCAGCTGACAGACAACGATAGCGCCTTCTTGGATTCAAGTAACGAGAGCTCGTTCAGCGATGAGGAC GAGATGCAAGGCAGCGCAGGGGGTGGTCCTTTTAAAAGTGACAAGTCCGGCAGCTCCGACGAGACCGGAACATCGTAA
AA sequence Show only first row Show all	>Lus10017342 pacid=23140221 polypeptide=Lus10017342 locus=Lus10017342.g ID=Lus10017342.BGIv1.0 annot-version=v1.0 MKGRSHRLQSHENHHEDWVDGSWTVDCICGVNFDDGEEMVNCDECGVWVHTRCSRYVKGDDLFACDKCKAKNNRYRDNAETEVAQLLVELPTKTIRLESS CANGAPPRRAVRLWTDMPLEEKVHVQGIPGGDPALFRGLSSVFTPELWKCTGYVPKKFNFQYREFPCWDKDSDVNNEDDNENNVDKGAGVLFSLSKESMF AVPREEKIDRQKSVLLKETKKRDLRSGEVGGSHVGLKKKRSLLQPVLIHSGKRKKEDPSMFKDQSGKKKARVSDKEVDSKKRGHQTSRTAFPSTSSDAKT SKLHEGRDPPCRKDVGQDTKNSYKKEQVSQQCESDNHVARCNIVEDSKSDTLLIDHSMDTPTTVKDNLAMEAILKERRTSHGISSSPTSSLKIDDVLSME RGEVGRNQMPVKQEEDTEMNSSPAGTEKKDLVEKVDSANVEINDSYIRTTIVLGVPSDSRFWVMKSPPASGGTKDAVRSSDNDSENIKINDVVPAVSPQD KNVEEVERTLDAEAVSKCDKEMAVESKCPAEEVSQLSGDHSKITKGESGGSGDAVPVKKCNSEVNQDFDSAEGQLKSSKIILSSPALSSQQKIAATVGKS LSNSSTNTIPKSAAPDHFTSTDEKKAIADTKNPIISDTLDKKDQTANDIVSDRDVDRRSPSRGRSRDHPRSSLNSSSKFSSTSKSLHTSTSRRAASNSKD FTTQSSSKVSLTKNPCAAAGSLQSERCSNSQNRTPGSGLPRSEKLNHSISQSASKPTHSSSSNLTPPTTSISTLSDEELALLLHQELNSSPRVPRVPRVR QGTQLTSPTAASLLMKRSTSSSGAKDFSSFSRRKAKDVSKDGHSRAHRLDDEPRRAERHHSSPDRRRQDPESKRDEGGSSMRAQRVKKNTAPVSNSTANS GRSSSTDGNDHHVSSLRKSPQSISDEETGPANGSVRRTLPGLINEIMSKGKRMTYEELCNAVLPHWPSLRKHNGERYAYSSHSQAVLDCLRNRHEWARLV DRGPKTSSSRKRRKTDAEESEDNEVGKGRSRREREGKSDVEADREEFTKGKRNARKRRRLALQGRGVKDARKPPKGDHQLTDNDSAFLDSSNESSFSDED EMQGSAGGGPFKSDKSGSSDETGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10017342 [exp]	0	1
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	4.6	0.8390
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	5.5	0.8320
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	7.9	0.8275
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	12.6	0.8209
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	14.4	0.8218
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10010629 [exp]	15.9	0.7794
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	16.0	0.7585
AT2G02148			unknown protein		Lus10035090 [exp]	18.0	0.7722
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	18.3	0.8124
AT1G17130			Family of unknown function (DU...		Lus10013706 [exp]	21.9	0.7753

Compare expression of checked genes

Lus10017342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.