Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10570 1041 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 1027 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 999 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT2G40930 785 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G22030 651 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT4G31670 94 / 1e-19 UBP18 ubiquitin-specific protease 18 (.1) AT5G46740 94 / 2e-19 UBP21 ubiquitin-specific protease 21 (.1) AT5G10790 93 / 3e-19 UBP22 ubiquitin-specific protease 22 (.1) AT2G24640 92 / 3e-19 UBP19 ubiquitin-specific protease 19 (.1.2) AT2G32780 94 / 4e-19 ATUBP1 ubiquitin-specific protease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001661 [exp] 1690 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 1350 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 936 / 0 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10027289 [exp] 823 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 773 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10013369 [exp] 672 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 655 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 628 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 625 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G449000 [exp] 1256 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 1255 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.006G033800 [exp] 836 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 822 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G214800 [exp] 689 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 629 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.016G067400 [exp] 205 / 3e-58 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G017000 [exp] 108 / 2e-24 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.006G266100 [exp] 107 / 5e-24 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G123200 [exp] 102 / 2e-22 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF06337 [flax] [poplar] DUSP DUSP domain
Representative CDS sequence Show only first row Show all	>Lus10017343 pacid=23140193 polypeptide=Lus10017343 locus=Lus10017343.g ID=Lus10017343.BGIv1.0 annot-version=v1.0 ATGGACAATCAGGCCAACCAGGAGAAGCAGATCGTCAACCAATTGACTAGCCAAGCTGAGCTCGATTTGAAGCAAGGCGATCTCTACTTTGTCGTTTCCT CCGTGTGGTTCTCGAAATGGGAGAGGTATGTTGGTCAAAGTGCGAATGAGTGCTTATCGGACTCGCAGTCCTCCGGTGACTCTACTTCCACGTCGGTTGA TAGACCTGGTCCAATTGATAACTCCGATTTAGTTGACAATCCGAGTCATTCTGGTGGTGACGATCTGGACGTTGTTAGAACCTTGCTTGAAGGCAAAGAT TATGTTCTGGTTCCTCGGCAAGTCTGGGAGAAGCTTGTGCAGTGGTACAAAGGAGGTCCAGCATTGCCCAGGAAAGTTATTCCACAGGGTGTTTCTAGTA AAAGGCAGCTCAATGTTGAGGTTTATCCACTTCGCTTGCTGTTGATTGATTCCAGAGACAAGAGCATATCCACAATTCGGTTAAGCAAAAAGGCTTCTTG CAGTGAACTGTATGAGAGGGTCTGTGCACTTAAGGGAGTGGAGAGAGAAAAGTGCTTGCTTTGGGACTACTTCAATAACCAAAGACATTCGAAGCTTGTC TATTCCAATCAAAGCCTTGAGGAATTGAATTTGCAGATGGACCAAGAGATACTTCTCGAGCTACAAGTAGATCAATTGTATTCTTCTCAATCTGGAAATG ATGCAAGTTGGAACGAATTAGCCGTGGTGCCACTGGAGGCACACAGGACCCGACAATCAATTGCTGGAGGCTCAAGTGTGTCGAATGGTCACCCAAACTC TTATAGCATCAACACACAACCAGGAAATGTAAACTCCATCTTTAATGATGTAGGCGAGGGTCTTGGTACTAAAAAATCTATGAAAAAAGAGGAGAAGGGA GGTTTGGCAGGACTGCAGAACTTGGGAAATACTTGCTTTATGAACAGTGCTTTACAGTGCTTAATCCACACTCCCCTGCTTGTTGATTACTTCCTCGAAG ATTACACTGCAGAAATCAACAAAGAAAATCCACTAGGAATGCATGGTGAGCTTGCACTTGCATTTGGCGAGTTGCTGAGGAAATTGTGGTCATCTGGGCG GAATGCAGTTGCTCCACGTGCATTTAAAGGGAAACTATCACTTTTTGCTCCACAGTTTTGTGGCTATAATCAGCATGATTCCCAAGAGCTTCTTGCCTTT TTATTGGATGGCTTACATGAAGATTTGAATCGTGTGAAACGGAAGCCTTACATTGAGATGAAGGATAGTAGTGGTCATCCGGATGAGGAAGTTGCAGATG AGAGTTGGCAATATCACAAGGCTCGGAATGATTCTGTTATTGTAGACGTTTGCCAGGGTCAATACAAGTCAACATTGGTTTGTCCAGTTTGCAGCAAAAT TTCTGTTACTTTTGATCCACTCATGTACTTGTCATTACCACTACCTTCAACGGTCACTCGGTCTATGACAGTGACAGTATTTTATGGGGATGGAAGTGGT CTCCCAATGCCATACACGGTGTCGGTGATGGAAAATGGACAGTGCAGGGATCTTACCCAAGCACTAGGAGCTGCATGCTGTTTGAAAGCTGATGAAAGCC TCCTGTTGGCAGAAGTCTATGAACACAAGATTTATCGTTTCTTTGAGAATCCTTCTCAGCTGTTGACTTGTATAAAGGATAAAGACCATCTCGTGGCTTA CCGTTTATCCGAAAAGGGTGAAAGAAAAAAGAAACTAGAGATTATTCATCGGGAAGGGTCGTCGGCTGATTCTCTGAAGGGTGGTGTTGGAGAGTATTTC GGAACACCTCTGGTTACGTATTTGGACAGAGACCAGCAAACTGGAGCTGAAATCGATGGTGTTGTATCAAGATTACTCTTACCCTTTAGGAGAGTGACTC CTTCTGCAATAGGTTACAGTGGCGAGGAAAATGGTAATCTCATGGCTGCTACTGATGCAATCTCAACTGATTACTCAGTTGAGTGTGAACCTATGGATGA GTCGATGGATGTGACGAGCCAACAACTTGTAAACCAGCTCTTCTCAGTTGAAGACTACGGCTCATCCAGCAAGCGTATTCATAGGGACTCTGTCTTGAAA ACTAGCAACCATACAAAGATCTTCCTGGACTGGACGGAAGAACATAAGCTGTATGATTCTAGCTACCTGAAAGACCTTCCTGATGTGTTCCATAGAACTG GGTTTAGCACAAAGAAAACCAAGCAGGACGCCATCTCGTTGTTTTCGTGCTTGGAGGCGTTTTTAAGGGAAGAACCTCTTGGACCTGATGACATGTGGTA TTGTCCAAACTGTAAAGAACATCGTCAAGCCACCAAGAAACTGGACTTATGGAAGTTACCCGAGATTCTCGTCGTACACATGAAGCGATTCTCATACAGT AGATTCTTGAAGAACAAACTGGACACGTATGTGGATTTCCCAATCCATAGTCTTGACTTAAGCAAGTACGTGAAAAAGAAGGATGGCGACTCTTGTATGT ACGAGCTCTACGCAATCAGCAACCATTACGGCGGTCTAGGTGGTGGACACTACACAGCATATGCAAAGCTAACTGATGAGGATAGGTGGTATAATTTCGA CGACAGCAGGGTCACACCAGTCGATGAGGCGGAGATCAAGACTTCGGCTGCATACGTGCTATTCTACAGAAGAGTGAAAGCTCAAACACAGTAA
AA sequence Show only first row Show all	>Lus10017343 pacid=23140193 polypeptide=Lus10017343 locus=Lus10017343.g ID=Lus10017343.BGIv1.0 annot-version=v1.0 MDNQANQEKQIVNQLTSQAELDLKQGDLYFVVSSVWFSKWERYVGQSANECLSDSQSSGDSTSTSVDRPGPIDNSDLVDNPSHSGGDDLDVVRTLLEGKD YVLVPRQVWEKLVQWYKGGPALPRKVIPQGVSSKRQLNVEVYPLRLLLIDSRDKSISTIRLSKKASCSELYERVCALKGVEREKCLLWDYFNNQRHSKLV YSNQSLEELNLQMDQEILLELQVDQLYSSQSGNDASWNELAVVPLEAHRTRQSIAGGSSVSNGHPNSYSINTQPGNVNSIFNDVGEGLGTKKSMKKEEKG GLAGLQNLGNTCFMNSALQCLIHTPLLVDYFLEDYTAEINKENPLGMHGELALAFGELLRKLWSSGRNAVAPRAFKGKLSLFAPQFCGYNQHDSQELLAF LLDGLHEDLNRVKRKPYIEMKDSSGHPDEEVADESWQYHKARNDSVIVDVCQGQYKSTLVCPVCSKISVTFDPLMYLSLPLPSTVTRSMTVTVFYGDGSG LPMPYTVSVMENGQCRDLTQALGAACCLKADESLLLAEVYEHKIYRFFENPSQLLTCIKDKDHLVAYRLSEKGERKKKLEIIHREGSSADSLKGGVGEYF GTPLVTYLDRDQQTGAEIDGVVSRLLLPFRRVTPSAIGYSGEENGNLMAATDAISTDYSVECEPMDESMDVTSQQLVNQLFSVEDYGSSSKRIHRDSVLK TSNHTKIFLDWTEEHKLYDSSYLKDLPDVFHRTGFSTKKTKQDAISLFSCLEAFLREEPLGPDDMWYCPNCKEHRQATKKLDLWKLPEILVVHMKRFSYS RFLKNKLDTYVDFPIHSLDLSKYVKKKDGDSCMYELYAISNHYGGLGGGHYTAYAKLTDEDRWYNFDDSRVTPVDEAEIKTSAAYVLFYRRVKAQTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	2.4	0.7730
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10019627 [exp]	6.2	0.7336
AT1G72190			D-isomer specific 2-hydroxyaci...		Lus10009456 [exp]	6.5	0.6480
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10033345 [exp]	8.7	0.7498
AT3G54880			unknown protein		Lus10038690 [exp]	14.1	0.6421
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	15.3	0.6853
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	20.2	0.6891
AT5G02440			unknown protein		Lus10016560 [exp]	28.6	0.6276
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10039696 [exp]	37.8	0.6898
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	38.5	0.6979

Compare expression of checked genes

Lus10017343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.