Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32860 458 / 8e-161 Glycosyl hydrolase superfamily protein (.1) AT5G42100 426 / 4e-148 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT2G27500 409 / 4e-142 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G30080 361 / 7e-123 Glycosyl hydrolase superfamily protein (.1) AT4G18340 359 / 2e-122 Glycosyl hydrolase superfamily protein (.1) AT2G26600 335 / 7e-113 Glycosyl hydrolase superfamily protein (.1.2) AT3G15800 330 / 6e-111 Glycosyl hydrolase superfamily protein (.1) AT2G05790 311 / 2e-102 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 309 / 8e-102 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 306 / 6e-101 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001660 [exp] 656 / 0 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 546 / 0 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 545 / 0 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 400 / 2e-138 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 400 / 7e-138 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10038501 [exp] 363 / 3e-124 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 362 / 5e-123 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 357 / 1e-121 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 340 / 1e-115 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152400 [exp] 511 / 0 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 508 / 0 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 395 / 8e-137 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 392 / 2e-135 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 377 / 2e-129 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 374 / 3e-128 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 365 / 1e-124 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 351 / 3e-119 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 348 / 2e-117 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 329 / 7e-110 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10017344 pacid=23140202 polypeptide=Lus10017344 locus=Lus10017344.g ID=Lus10017344.BGIv1.0 annot-version=v1.0 ATGGGGATCAACTACGGCCAGATAGCCAACAACCTCCCGTCCCCACAGGACGCCGTCCCCTTGATAAAAGCCCTCGGAGCTACCAAAGTGAAGCTCTACG ACGCCAGCCCTCAAATCCTGCGAGCATTCTCCCACTCCAATATCGAATTCATCATCGGCCTCGGCAACGAGTACCTCTCCAAGATGGCGGCAGACCAAAA CGCCGCCGTATCCTGGGTCAAATCAAACGTCCAGACTTACCTTCCGGCCACCAACATCACCTACATCGCCGTCGGCAACGAAGTCCTCACACTATCCGAC GAATCTTTCATCCCCTTCCTCGTCCCAGCGCTTCAATCAATCCTATCCGCCGTCGTATCCTTAAATCTCCAAAAACAGGTCACCGTCACAACTCCTCACT CCCTCGCTGTACTTCAAACCTCCTATCCTCCTTCCTCCGGCACCTTCCGGCGAGATCTAATCGGCTGCATCTCTAAAATTCTCGATTTCAACGCCAAGAC GAACTCCCCGTTTCTAATCAACGCTTATCCTTACTTCGCTTACAAGGCGAATCCCAAGCAGGTCTCTCTGGATTTCGTCCTGTTTCAACCAAATCAAGGG ATTATCGACCCGGTCTCCAATCTCCACTACGATAACATGCTGTTCGCCCAGATCGACGCCGTCCATTTCGCCCTAGCTTCGCTAGGGTATAAAGACATGC CGGTCCACATATCGGAGACTGGTTGGCCGTCCAAAGGCGACGATGACGAAGCTGGAGCTACCCCCGAGAACGCCAAGAAATACAACGGCAACTTAATCAA GACCATCTGTCAACGGAAAGGAACTCCGGCGAGGCCCAATTTGGATTTGAATATCTACGTGTTCGCTCTGTTTAATGAGAACATGAAGCCCGGCCCAACT TCCGAGAGGAATTACGGCCTGTTTAAGCCCGACGGGACTCCTGCTTACTCGATAGGGATTGACTTGCCGGCGGGGAACAGCAATCGGAGCAGCCCTGCGG CTCCGACTGCGCATTCGCCGCCATCGTCAGCTGGGGTAAGTCCTCCGGTTGGTTACTTGGCGATTACCGGCGGTGCTGGGAGGATAAAGGTCAGCTTTTT GTCTTCGTCGGTAGGGATATTGGTGATGCTGGTTCAGCTGTCGTTTATGGCTGACAGGTGTTAA
AA sequence Show only first row Show all	>Lus10017344 pacid=23140202 polypeptide=Lus10017344 locus=Lus10017344.g ID=Lus10017344.BGIv1.0 annot-version=v1.0 MGINYGQIANNLPSPQDAVPLIKALGATKVKLYDASPQILRAFSHSNIEFIIGLGNEYLSKMAADQNAAVSWVKSNVQTYLPATNITYIAVGNEVLTLSD ESFIPFLVPALQSILSAVVSLNLQKQVTVTTPHSLAVLQTSYPPSSGTFRRDLIGCISKILDFNAKTNSPFLINAYPYFAYKANPKQVSLDFVLFQPNQG IIDPVSNLHYDNMLFAQIDAVHFALASLGYKDMPVHISETGWPSKGDDDEAGATPENAKKYNGNLIKTICQRKGTPARPNLDLNIYVFALFNENMKPGPT SERNYGLFKPDGTPAYSIGIDLPAGNSNRSSPAAPTAHSPPSSAGVSPPVGYLAITGGAGRIKVSFLSSSVGILVMLVQLSFMADRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	1.0	0.8927
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	2.0	0.8920
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021292 [exp]	2.4	0.8843
AT5G38060			unknown protein		Lus10004070 [exp]	2.8	0.8729
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	4.5	0.8633
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	6.0	0.8608
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	6.9	0.8366
AT3G57400			unknown protein		Lus10018074 [exp]	7.1	0.8221
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	13.5	0.8189
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	13.7	0.8366

Compare expression of checked genes

Lus10017344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.