Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17220 64 / 5e-13 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT1G48020 64 / 8e-13 ATPMEI1 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) AT2G31430 43 / 3e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G05741 39 / 0.0007 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001658 [exp] 158 / 1e-49 AT1G48020 86 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10017345 [exp] 158 / 2e-49 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1) Lus10017347 [exp] 152 / 3e-47 AT3G17220 81 / 2e-19 pectin methylesterase inhibitor 2 (.1) Lus10041650 [exp] 97 / 1e-25 AT1G48020 85 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10001659 [exp] 87 / 2e-21 AT1G48020 51 / 3e-08 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10023114 [exp] 69 / 6e-15 AT3G17220 60 / 2e-11 pectin methylesterase inhibitor 2 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10017346 pacid=23140144 polypeptide=Lus10017346 locus=Lus10017346.g ID=Lus10017346.BGIv1.0 annot-version=v1.0 ATGGCAATCCCAATGGCGACATTGTGCTTATTCCTCACCGTCATGGCCGTCCCTTATGTCGCGGCTGAGGTCCATGTAACGTTATCTTCAGAAGATATCG TTGCGATATGCGACAAGATCCTTGACCTTGGTTATTGCCTCAACTTTCTCAAGTCGACGCCCGGCATGGCGACCGCCGATCTCAAAGGTGCCGGTCTAAT CACCTTAGACATATCACTTTCCCAGGTTGCTGACATTGAGAAATTCATCAATATCTTATCGGTGCAATCTGCTGGGGACCCTTCGGCGAATGCAAATTAC AAGTCATGCCTGGACAGCTATGGGGAAGCTGTCCGTGACATTGAGTCTGCCAAGTCGTCGCTAACCAGCGGCGACTACAATGGCGCCAACATCCAGGCCG CGGCTGCTATGGGTAATGCCGATGATTGCGTTGAAAGCTCCGTGGGAGCGAAGCTGGTGGAGAGGAACAATAATTTGAAAAAGGCTCTTGGGATCGTTTT AATAATCTCCAACAAGTTGCTTGGACAATGA
AA sequence Show only first row Show all	>Lus10017346 pacid=23140144 polypeptide=Lus10017346 locus=Lus10017346.g ID=Lus10017346.BGIv1.0 annot-version=v1.0 MAIPMATLCLFLTVMAVPYVAAEVHVTLSSEDIVAICDKILDLGYCLNFLKSTPGMATADLKGAGLITLDISLSQVADIEKFINILSVQSAGDPSANANY KSCLDSYGEAVRDIESAKSSLTSGDYNGANIQAAAAMGNADDCVESSVGAKLVERNNNLKKALGIVLIISNKLLGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017346 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	5.8	0.7297
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10000163 [exp]	6.7	0.6958
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10022262 [exp]	24.3	0.6558
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	24.6	0.6795
					Lus10001546 [exp]	29.0	0.6537
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10000029 [exp]	37.7	0.6572
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	40.5	0.6678
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	48.4	0.6786
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	49.5	0.6414
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10035793 [exp]	60.0	0.6772

Compare expression of checked genes

Lus10017346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.