Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17220 80 / 5e-19 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT1G48020 79 / 8e-19 ATPMEI1 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) AT5G46960 53 / 5e-09 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G02250 49 / 1e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G27999 49 / 1e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G50340 47 / 8e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G50325 44 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17150 43 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46950 42 / 5e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G55770 41 / 0.0001 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001658 [exp] 226 / 1e-76 AT1G48020 86 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10017345 [exp] 219 / 6e-74 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1) Lus10017346 [exp] 172 / 2e-55 AT3G17220 79 / 8e-19 pectin methylesterase inhibitor 2 (.1) Lus10041650 [exp] 152 / 3e-47 AT1G48020 85 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10001659 [exp] 140 / 2e-42 AT1G48020 51 / 3e-08 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10023114 [exp] 89 / 2e-22 AT3G17220 60 / 2e-11 pectin methylesterase inhibitor 2 (.1) Lus10008201 [exp] 64 / 6e-13 AT4G02250 113 / 3e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001464 [exp] 62 / 5e-12 AT4G02250 112 / 1e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10019498 [exp] 54 / 5e-09 AT5G46970 87 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044100 [exp] 58 / 7e-11 AT5G46940 111 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G134900 [exp] 54 / 2e-09 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G127500 [exp] 52 / 1e-08 AT4G02250 98 / 3e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G209800 [exp] 50 / 6e-08 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.003G086500 [exp] 49 / 2e-07 AT5G46940 119 / 6e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086600 [exp] 47 / 1e-06 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.009G083500 [exp] 45 / 3e-06 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10017347 pacid=23140250 polypeptide=Lus10017347 locus=Lus10017347.g ID=Lus10017347.BGIv1.0 annot-version=v1.0 ATGGCAAACTCGTCTTTATTCCTCTCGGTCGCTGTCCTCCTCCTCCTATCCCAGACCCTCCCATATGTAGCTCCCTTAGCCCCACAGGAGATCGCCGCGA TATGCGACCAGAGCCTCGACCGCAACGTCTGCCTCAACTTCCTCGAGACGACGCCCGGAATCTCGACCGCCGATCTCAAGGGCGCCGGTCTCATCACCCT GGACTCAACACGTGCGGAGGTCGCCGACACGGAGAAGTTCATCAAAAAGCTGTTGGGACATCCCGCTGACCCCAAGATGAAGGAGAGCTACAAGTCGTGC CTGGAAAGCTATGGCGATGCCTCGGACGACATCGAGGATGCCAAAGCGTCGCTGACTGGCGGCGACTACAACGGCGCTAACATCCAAGCCTCGGCGGCTC AGACGTTTGTCGACGGTTGCGACGAGGACGTCAAGGGTTCGGAGCTGTCAAAGAGGAACCAGCACTTGTTGAAGGTTCTTGAGATCGTTTTGATCATCGC TAACAAGTTGATCGGACATTGA
AA sequence Show only first row Show all	>Lus10017347 pacid=23140250 polypeptide=Lus10017347 locus=Lus10017347.g ID=Lus10017347.BGIv1.0 annot-version=v1.0 MANSSLFLSVAVLLLLSQTLPYVAPLAPQEIAAICDQSLDRNVCLNFLETTPGISTADLKGAGLITLDSTRAEVADTEKFIKKLLGHPADPKMKESYKSC LESYGDASDDIEDAKASLTGGDYNGANIQASAAQTFVDGCDEDVKGSELSKRNQHLLKVLEIVLIIANKLIGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017347 [exp]	0	1
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	1.0	0.9433
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	3.7	0.9132
					Lus10025141 [exp]	4.7	0.9289
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	4.9	0.9258
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	8.1	0.9199
					Lus10003556 [exp]	8.7	0.9248
AT4G38810			Calcium-binding EF-hand family...		Lus10026291 [exp]	9.6	0.8839
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	9.9	0.9061
AT1G60783			unknown protein		Lus10004622 [exp]	10.2	0.9067
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	10.2	0.9042

Compare expression of checked genes

Lus10017347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.