Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20180 246 / 2e-77 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G49070 121 / 2e-30 Protein of unknown function (DUF677) (.1) AT3G19250 54 / 8e-08 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010144 [exp] 640 / 0 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017286 [exp] 432 / 2e-150 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10005612 [exp] 416 / 6e-144 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10039258 [exp] 85 / 7e-19 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10031977 [exp] 72 / 3e-13 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10035125 [exp] 66 / 2e-12 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10028573 [exp] 55 / 2e-08 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G243800 [exp] 302 / 2e-99 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 296 / 3e-97 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G193000 [exp] 134 / 3e-35 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G067300 [exp] 127 / 1e-32 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 113 / 9e-28 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.010G240200 [exp] 55 / 5e-08 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10017348 pacid=23140268 polypeptide=Lus10017348 locus=Lus10017348.g ID=Lus10017348.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTTTCATGCACAAAGCTCCGATCTTTCCTCTTCCCAAAAGCGAGATCGCAGAACGAGGGATCATCGGCGGGTAGCTTGAGAAACAAGCTAA CGGTGAATGAGGAGTACAAGGAAGCGTTTCGGACCGAGTCCTATGTGGAAATGTGGACGGAACTCCAATCTAAGTTAATTGAGCGCCGCAATTCTTCTTC TATTACTACTACCTCTTCAGAATCTGGATCGTCATCTTCCTCGTCATCATCATTGTCTCATCTCTCCGATTATCTGTTCAGGCCACCTCCGGAACAGGAA ACGATCGCGCAATTGCTCGAGAGATTTGGGGGTCATGATAGCCTTTTGATCGAATACTTCGAATCAAATTTAGTAGCGTGCGACATCTGCGAGATGTTGC TCCGAGCAGTCCATTCGACTCGCGCCCACTACAATAAACTCAAGAGGGTGATCAAGTTAGCTAAACGTGTGAAATTATGCAACGAAACCGGATCAACATC GTCCCATAATTGCACCAAGGTTTCTGCAGCAATGTATAGGGACCTTACTGGGTACGCAATGCATACAAACCCTTTACTATCATTAGTCGGACCGGTCCGG TTCGAGCAAATTCACGACAACAATACTCAGTTGCTCCGTGAATTGACTCGAAAAAGGAGGAGCATCCAGCGCCGAGCCAAAGTGAGCAGGATCCTGAAGA AAGTCGGAGGCTGCACCGTAGTGATTATCCACACAACGTTAATGGTCACACTATTGGTGATTGCCCTCCACAGCTTGGCCGGGATCTTAGTGGTCCCGAC CGTGATCAGTTGCTTCGGAGGTTCCTTGTCGCGCAAGCAACCCAAGCAACCTGGCTTCGGAGGTGTCTTTTCTCACAAGCAACCCAAGCAAGCTGGCTTC AAAGGTTGCTTATCGCGCAAGAAACTCAAGCAGACTGTGTGCGCAACCTCGACGGATCCATTGGGGCTGTGCATGCAGCTTGACATAGCGGCGAAGGGGA TGTTCTTCTTGATCAACGACTTCGACAGCATCAGTCGACTGGTGATGAGCCTGAGCAACGAGGTCGAGCACCGGAAGGTGCTTGCCGGGATGTGTGTTAG GAACAAGAATGGAGAGCTTTTAAAGCAGGTGGTGAAGGAGCTTTGTGCATACGATGATTGTTACTCGGAACAGCTGGATGAGCTCGAAGAACATGTGTAT TTGTGCTTTCATACCATTAACAGATCTAGAAGGTTCTTATTGCAAGAGTTTATGAAGGAGGGCAATAAGGGTTTTGATCATGATGATGTTGGCAGTGCAG AGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10017348 pacid=23140268 polypeptide=Lus10017348 locus=Lus10017348.g ID=Lus10017348.BGIv1.0 annot-version=v1.0 MKKLSCTKLRSFLFPKARSQNEGSSAGSLRNKLTVNEEYKEAFRTESYVEMWTELQSKLIERRNSSSITTTSSESGSSSSSSSSLSHLSDYLFRPPPEQE TIAQLLERFGGHDSLLIEYFESNLVACDICEMLLRAVHSTRAHYNKLKRVIKLAKRVKLCNETGSTSSHNCTKVSAAMYRDLTGYAMHTNPLLSLVGPVR FEQIHDNNTQLLRELTRKRRSIQRRAKVSRILKKVGGCTVVIIHTTLMVTLLVIALHSLAGILVVPTVISCFGGSLSRKQPKQPGFGGVFSHKQPKQAGF KGCLSRKKLKQTVCATSTDPLGLCMQLDIAAKGMFFLINDFDSISRLVMSLSNEVEHRKVLAGMCVRNKNGELLKQVVKELCAYDDCYSEQLDELEEHVY LCFHTINRSRRFLLQEFMKEGNKGFDHDDVGSAEKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20180			Protein of unknown function (D...		Lus10017348 [exp]	0	1
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	1.0	0.8613
AT1G06330			Heavy metal transport/detoxifi...		Lus10001892 [exp]	1.4	0.8445
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10040274 [exp]	11.0	0.8307
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037661 [exp]	14.0	0.8399
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	36.4	0.7937
AT1G60590			Pectin lyase-like superfamily ...		Lus10029140 [exp]	43.8	0.7479
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028442 [exp]	66.5	0.7888
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026234 [exp]	68.6	0.7735
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10002314 [exp]	86.3	0.7650
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10004226 [exp]	103.6	0.7378

Compare expression of checked genes

Lus10017348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.